View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19163_high_26 (Length: 334)
Name: NF19163_high_26
Description: NF19163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19163_high_26 |
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| [»] chr7 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 10 - 334
Target Start/End: Original strand, 33672671 - 33672995
Alignment:
| Q |
10 |
tcgaagaatatcatgtgttttgatgtcggacaccttcgagtagaagtgttgatgctacaaaggagaaacatatttaannnnnnnnnnnnn-agtttagtt |
108 |
Q |
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| T |
33672671 |
tcgaagaaaatcatgtgttttgatgtcggacaccttcgagtagaagtgttgatgctacaaaggagaaacatatttaatttttattttttttagtttagtt |
33672770 |
T |
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| Q |
109 |
tatggttggtgttattatttattgnnnnnnnntgggacccattatacattttttaacatgatcattgttgttgtttttatgttatgccccactgggccat |
208 |
Q |
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| T |
33672771 |
tatggttggtgttattatttattgtaaaaa--tgggacccattatacattttttaacatgatcattgttgttgtttttatgttatgccccactgggccat |
33672868 |
T |
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| Q |
209 |
tgacattgattcttcatgnnnnnnnnn-gtgttatctatgatgtatgagatctataatgaggctgacctagtagaaatatacttgggccctgtttggata |
307 |
Q |
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| T |
33672869 |
tgacattgattcttcatgttttttttttgtgttatctatgatgtatgagatctataatgaggctgacctagtagaaatatacttgggccctgtttggata |
33672968 |
T |
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| Q |
308 |
aactacctatatgcagcttatagcaca |
334 |
Q |
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| T |
33672969 |
aactatttatttgcagcttatagcaca |
33672995 |
T |
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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 288 - 334
Target Start/End: Complemental strand, 3735700 - 3735654
Alignment:
| Q |
288 |
acttgggccctgtttggataaactacctatatgcagcttatagcaca |
334 |
Q |
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| T |
3735700 |
acttggggcctgtttggataaacaacctatttgcagcttatagcaca |
3735654 |
T |
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