View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19163_high_28 (Length: 325)
Name: NF19163_high_28
Description: NF19163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19163_high_28 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 42336868 - 42337176
Alignment:
| Q |
1 |
cagccataagcacatgaaaacagttacaaagacagcaaagaatgacaattcaaatgaataaatcaaatcaagtaaacaggtttcacacctttcgtatcca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42336868 |
cagccataagcacatgaaaacagttacaaagacagcaaagaatgacaattcaaatgaataaatcaaatcaagtaaacaggtttcacacctttcgtatcca |
42336967 |
T |
|
| Q |
101 |
ttgcactttcatggttccagtagtaggacactcttctaatgttgtcgagttcacaagcatatcgtcccatttaggtcggaattgatcatcccagaataaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42336968 |
ttgcactttcatggttccagtagtaggacactcttctaatgttgtcgagttcacaagcatatcgtcccatttaggtcggaattgatcatcccagaataaa |
42337067 |
T |
|
| Q |
201 |
tccctcaccatctcaggagttgcatcttcaaaaatagtactgcttcgatattggggaggaccatcctattgaatcaaaaagacaaattaagtaatttgaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42337068 |
tccctcaccatctcaggagttgcatcttcaaaaatagtactgcttcgatattggggaggaccatcctattgaatcaaaaagacaaattaagtaatttgaa |
42337167 |
T |
|
| Q |
301 |
taaaccaac |
309 |
Q |
| |
|
||||||||| |
|
|
| T |
42337168 |
taaaccaac |
42337176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 185 - 232
Target Start/End: Complemental strand, 1177374 - 1177327
Alignment:
| Q |
185 |
atcatcccagaataaatccctcaccatctcaggagttgcatcttcaaa |
232 |
Q |
| |
|
|||||||||||| ||||||||||| | ||||||||||||||||||||| |
|
|
| T |
1177374 |
atcatcccagaagaaatccctcactaactcaggagttgcatcttcaaa |
1177327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University