View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19163_high_38 (Length: 257)

Name: NF19163_high_38
Description: NF19163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19163_high_38
NF19163_high_38
[»] chr8 (10 HSPs)
chr8 (19-232)||(36188794-36189007)
chr8 (19-211)||(36210275-36210467)
chr8 (19-204)||(36197157-36197342)
chr8 (19-204)||(36214861-36215046)
chr8 (19-204)||(36213617-36213808)
chr8 (19-153)||(36208188-36208322)
chr8 (19-97)||(36185004-36185082)
chr8 (19-95)||(36201331-36201405)
chr8 (30-90)||(36199303-36199363)
chr8 (19-80)||(36202716-36202777)


Alignment Details
Target: chr8 (Bit Score: 158; Significance: 4e-84; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 19 - 232
Target Start/End: Original strand, 36188794 - 36189007
Alignment:
Q  19 aatgtctggcttctttgttacagttgttgtgacaatcttttggaacaattgatctttctcagctgttcttatagctgttaatgcagaacgctcgactcnn 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  36188794 aatgtctggcttctttgttacagttgttgtgacaatcttttggaacaattgatctttctcagctgttcttatagctgttaatgcagaacgctcgactctt 36188893  T
Q  119 nnnnnnggcccgcataatccgattatattttctccattgtctctcactcctaatgcactcgtaatttgttttttaaccttaacatcaatataatcgttca 218  Q
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||  |||||||||||||| |     
T  36188894 ttttttggcccgcataatccgattatattttctccattgtctctcactcctaatgcactcgtaatttgaattttaaccttacgatcaatataatcgtgcc 36188993  T
Q  219 ccaaactacccccg 232  Q
    || ||||| |||||    
T  36188994 ccgaactagccccg 36189007  T

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Target: chr8; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 19 - 211
Target Start/End: Original strand, 36210275 - 36210467
Alignment:
Q  19 aatgtctggcttctttgttacagttgttgtgacaatcttttggaacaattgatctttctcagctgttcttatagctgttaatgcagaacgctcgactcnn 118  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||| ||| ||||||||||||||  ||||||| |||||||||      
T  36210275 aatgtctggcttctttgtcacagttgttgtgacaatcttttggaacgaatgatctttctctgctcttcttatagctgtttgtgcagaatgctcgactctt 36210374  T
Q  119 nnnnnnggcccgcataatccgattatattttctccattgtctctcactcctaatgcactcgtaatttgttttttaaccttaacatcaatataa 211  Q
          ||||||||||||||||||||||||||||| | ||||||||| | || ||||||| ||||||||| ||||||||||  ||||||||||    
T  36210375 ttttttggcccgcataatccgattatattttctccttggtctctcacacttagtgcactcataatttgttctttaaccttattatcaatataa 36210467  T

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Target: chr8; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 19 - 204
Target Start/End: Original strand, 36197157 - 36197342
Alignment:
Q  19 aatgtctggcttctttgttacagttgttgtgacaatcttttggaacaattgatctttctcagctgttcttatagctgttaatgcagaacgctcgactcnn 118  Q
    |||||||||||||||||| ||||||| |||||||||||||||||| ||||||||| |||||||| ||||||||||||||  ||||||| ||| |||||      
T  36197157 aatgtctggcttctttgtcacagttgctgtgacaatcttttggaataattgatctctctcagctcttcttatagctgtttttgcagaatgcttgactctt 36197256  T
Q  119 nnnnnnggcccgcataatccgattatattttctccattgtctctcactcctaatgcactcgtaatttgttttttaaccttaacatc 204  Q
          ||||| |||||||| || ||||||||||| | ||||||||||| || ||||||| ||||||||| |||||||||| ||||    
T  36197257 ttttctggcccacataatccaatgatattttctccttggtctctcactcttagtgcactcataatttgttctttaaccttatcatc 36197342  T

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Target: chr8; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 19 - 204
Target Start/End: Original strand, 36214861 - 36215046
Alignment:
Q  19 aatgtctggcttctttgttacagttgttgtgacaatcttttggaacaattgatctttctcagctgttcttatagctgttaatgcagaacgctcgactcnn 118  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||  | ||||| ||| ||||       
T  36214861 aatgtctggcttctttgtcacagttgctgtgacaatcttttggaacaattgatctctctcagctcttcttatagctgtttttacagaatgcttgactttt 36214960  T
Q  119 nnnnnnggcccgcataatccgattatattttctccattgtctctcactcctaatgcactcgtaatttgttttttaaccttaacatc 204  Q
          ||||||||||||||||||||| ||| ||  | ||||||||||| ||||||||||||||| |||| |||||| ||| ||||    
T  36214961 tcatctggcccgcataatccgattatactttatctctggtctctcactcttaatgcactcgtaatctgttctttaacattatcatc 36215046  T

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Target: chr8; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 19 - 204
Target Start/End: Original strand, 36213617 - 36213808
Alignment:
Q  19 aatgtctggcttctttgttacagttgttgtg------acaatcttttggaacaattgatctttctcagctgttcttatagctgttaatgcagaacgctcg 112  Q
    |||||||||||||||||| ||||||| ||||      |||||||||||||||||||||||| |||||||| ||||||||||||||  | ||||| ||       
T  36213617 aatgtctggcttctttgtcacagttgctgtgactgtgacaatcttttggaacaattgatctctctcagctcttcttatagctgtttttacagaaagcctt 36213716  T
Q  113 actcnnnnnnnnggcccgcataatccgattatattttctccattgtctctcactcctaatgcactcgtaatttgttttttaaccttaacatc 204  Q
    ||||        || |||||||||||||||||||||||||| | ||||||||||  ||||||| ||||||| || | |||||| ||| ||||    
T  36213717 actctttcatccgggccgcataatccgattatattttctccttggtctctcacttttaatgcattcgtaatctgatctttaacattagcatc 36213808  T

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Target: chr8; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 153
Target Start/End: Original strand, 36208188 - 36208322
Alignment:
Q  19 aatgtctggcttctttgttacagttgttgtgacaatcttttggaacaattgatctttctcagctgttcttatagctgttaatgcagaacgctcgactcnn 118  Q
    ||||||||| ||||| || ||||||| |||||||||||||||||||||||||||| |||||||| ||||| ||| ||||    ||||| ||| ||||       
T  36208188 aatgtctggtttcttggtcacagttgctgtgacaatcttttggaacaattgatctctctcagcttttcttctagatgttttaacagaatgcttgactatt 36208287  T
Q  119 nnnnnnggcccgcataatccgattatattttctcc 153  Q
          |||||||||||||||||||||||||||||    
T  36208288 ttatctggcccgcataatccgattatattttctcc 36208322  T

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Target: chr8; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 36185004 - 36185082
Alignment:
Q  19 aatgtctggcttctttgttacagttgttgtgacaatcttttggaacaattgatctttctcagctgttcttatagctgtt 97  Q
    ||||||||| ||||| || ||||||| |||||||||||||||||||||||||||| |||||||| ||||| ||| ||||    
T  36185004 aatgtctggtttcttggtcacagttgctgtgacaatcttttggaacaattgatctctctcagcttttcttctagatgtt 36185082  T

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Target: chr8; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 36201331 - 36201405
Alignment:
Q  19 aatgtctggcttctttgttacagttgttgtgacaatcttttggaacaattgatctttctcagctgttcttatagctg 95  Q
    ||||||||||||||| || ||||||| ||||||| |||||||||||||||||||  |||||||| ||||||||||||    
T  36201331 aatgtctggcttcttggtcacagttgctgtgacagtcttttggaacaattgatc--tctcagctcttcttatagctg 36201405  T

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Target: chr8; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 36199303 - 36199363
Alignment:
Q  30 tctttgttacagttgttgtgacaatcttttggaacaattgatctttctcagctgttcttat 90  Q
    ||||||| |||||||||||||||||||||||||||||||||||| |||| ||| |||||||    
T  36199303 tctttgtcacagttgttgtgacaatcttttggaacaattgatctctctcggctcttcttat 36199363  T

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Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 36202716 - 36202777
Alignment:
Q  19 aatgtctggcttctttgttacagttgttgtgacaatcttttggaacaattgatctttctcag 80  Q
    ||||||||||||||| || || |||| |||||||||||||| ||||||||||||| ||||||    
T  36202716 aatgtctggcttcttcgtcacggttgctgtgacaatcttttcgaacaattgatctctctcag 36202777  T

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