View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19163_high_4 (Length: 590)
Name: NF19163_high_4
Description: NF19163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19163_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 539; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 17 - 575
Target Start/End: Complemental strand, 35821316 - 35820758
Alignment:
| Q |
17 |
actttagatatgaacaattatgtcgaaacgggaatttcttttcctcgaaacttatctaaggtgtctgacatgtattgttcttgtgtcatgcgagtgttag |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35821316 |
actttagatatgaacaattatgtcgaaacgggaatttcttttccttgaaacttatctaaggtgtctgacatgtattgttcttgtgtcatgcgagtgttag |
35821217 |
T |
|
| Q |
117 |
tttctgatgcatgttggacacatggacacacctaaaccctggaggattgatgcttcacatatatccaatgatatccctcctgaacaacaagctctttgag |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
35821216 |
tttctgatgcatgttggacacatggacacacctaaaccctggaggattgatgcttcacatatatccaatgatatccctcctggacaacaagctctttgag |
35821117 |
T |
|
| Q |
217 |
cttcaaacgtggacaatatacaagtgcactttaccttatgctgaaacttaccggttatgaacagctgtcaagaatgtggatggcaaggattaatgtaggc |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
35821116 |
cttcaaacgtggacaatatacaagtgcactttaccttatgctgaaacttaccggttatgaacagttgtgaagaatgtggatggcaaggattaatgtaggc |
35821017 |
T |
|
| Q |
317 |
ctcgataccaagtaggcatgttaggaacaaatcatttaaaaataaagaggctagatgaaggcacatgaatggttttatatcgccaataatttgcattagc |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35821016 |
ctcgataccaagtaggcatgttaggaacaaatcatttaaaaataaagaggctagatgaaggcacatgaatggttttatatcgccaataatttgcattagc |
35820917 |
T |
|
| Q |
417 |
atgatatgttttaattcgacatattattaacaatgtgtaatgattcaagtaaaatgttttgtatttgaatatgcctttggattagtttatcacaaaactg |
516 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35820916 |
atgatatgttttaattcgacgtattattaacaatgtgtaatgattcaagtaaaatgttttgtatttgaatatgcctttggattagtttatcacaaaactg |
35820817 |
T |
|
| Q |
517 |
actaaggatcacaatttccttctaagctgcctcatggtgatatgcctgtttcttgtcat |
575 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35820816 |
actaaggatcacaatttccttctaagctgcctcatggtgatatgcctgtttcttgtcat |
35820758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University