View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19163_high_42 (Length: 250)
Name: NF19163_high_42
Description: NF19163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19163_high_42 |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 34506006 - 34506236
Alignment:
| Q |
1 |
tgtgggagattcattgagtctaaacatgtgggaatcattgtcttgtatgattcatgcgtcggttccgaatgtcactacaagcttttctaggaaagaacca |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34506006 |
tgtgggtgattcattgagtctaaacatgtgggaatcattgtcttgtatgattcatgcgtcggttccgaatgtcactacaagcttttctaggaaagaacca |
34506105 |
T |
|
| Q |
101 |
atgtctactgtcttcttccgggtaatagttacgttgttcttgtttaccgtcttagactcacacacatacatatgatgagtgaatatattaccatttgtgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||| |
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| T |
34506106 |
atgtctactgtcttcttccgggtaatagttacgttgttcttgtttactgtcttagactcacacacatata--------------atattaccatttgtgt |
34506191 |
T |
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| Q |
201 |
catcattttgtttgtttcttttgcgggttctttccctttgctact |
245 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34506192 |
catcattttgtttgtttcttttgcgggttctttccctttgctact |
34506236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 34516136 - 34516265
Alignment:
| Q |
1 |
tgtgggagattcattgagtctaaacatgtgggaatcattgtcttgtatgattcatgcgtcggttccgaatgtcactacaagcttttctaggaaagaacca |
100 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||| ||||||||||||||||||||||||| || |
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| T |
34516136 |
tgtgggtgattcattgagtctaaacatgtgggaatcattgtcttgtatgattcatgcatcggtaccaaatgccactacaagcttttctaggaaagaatca |
34516235 |
T |
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| Q |
101 |
atgtctactgtcttcttccgggtaatagtt |
130 |
Q |
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|||||||||| | |||| |||||||||| |
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| T |
34516236 |
gtgtctactgtgattttccaggtaatagtt |
34516265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 4690107 - 4690036
Alignment:
| Q |
1 |
tgtgggagattcattgagtctaaacatgtgggaatcattgtcttgtatgattcatgcgtcggttccgaatgt |
72 |
Q |
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|||||| |||||| ||||||| ||||||||||||||| |||| |||||||||||||||||||| || ||||| |
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| T |
4690107 |
tgtgggtgattcactgagtctgaacatgtgggaatcactgtcgtgtatgattcatgcgtcggtgcccaatgt |
4690036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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