View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19163_high_44 (Length: 247)
Name: NF19163_high_44
Description: NF19163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19163_high_44 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 8438941 - 8439174
Alignment:
| Q |
1 |
tattttatttctaagttttgtgcaggttgtttctatcttttacttagataatcgtttcaagccaatgatattgtaaataagcttaaggaattcacttctt |
100 |
Q |
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| T |
8438941 |
tattgtatttctaagttttgtgcaggttgtttctatcttt-acttagataatcgtttcaagccaatgatattgtaaataagcttaaggaattcacttctt |
8439039 |
T |
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| Q |
101 |
tcagctgggacccaatccattttaaaataattgtaaaagatgtgttaagtggtgattttatcactaataatagaaaaggaaaataatgatattgcattga |
200 |
Q |
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| T |
8439040 |
tcagctgggacccaatccattttaaaataattgtaaaagatttgttcagtggtgattttatcactaataatagaaaaggaaaataatgatattgcattga |
8439139 |
T |
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| Q |
201 |
tcaaattaaataccttcctcatagaagacccggacctttg |
240 |
Q |
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| T |
8439140 |
tc-----aaatacctttctcatagaagacccggacctttg |
8439174 |
T |
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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 206
Target Start/End: Complemental strand, 31947416 - 31947332
Alignment:
| Q |
124 |
aaaataattgtaaaagatgtgttaagtggtgattttatcactaataata--gaaaaggaaaataatgatattgcattgatcaaat |
206 |
Q |
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| T |
31947416 |
aaaatgattgtgaaagatatgttcaatggtgattttgtcactaataataatagaaaggaaaacaatgatattgcattgataaaat |
31947332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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