View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19163_high_53 (Length: 237)
Name: NF19163_high_53
Description: NF19163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19163_high_53 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 97; Significance: 8e-48; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 5 - 101
Target Start/End: Original strand, 43841497 - 43841593
Alignment:
| Q |
5 |
attggagtactatagcatggtaattcctaaacttaatctatttatgttgataaaatatgaattaacgcatcaacgtaagcataacttagttttatta |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43841497 |
attggagtactatagcatggtaattcctaaacttaatctatttatgttgataaaatatgaattaacgcatcaacgtaagcataacttagttttatta |
43841593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 142 - 204
Target Start/End: Original strand, 43841603 - 43841665
Alignment:
| Q |
142 |
tacgtaagcataacttagttaataaggaattgcaatatagagagattttaattcgaattatag |
204 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
43841603 |
tacgtaagcataatttagttaataaggacttgcaatatagagagatttgaattcgaattatag |
43841665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University