View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19163_high_54 (Length: 236)

Name: NF19163_high_54
Description: NF19163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19163_high_54
NF19163_high_54
[»] chr5 (9 HSPs)
chr5 (1-200)||(29999422-29999621)
chr5 (1-200)||(30045095-30045294)
chr5 (1-182)||(30070925-30071106)
chr5 (1-193)||(29990725-29990917)
chr5 (1-200)||(30005860-30006059)
chr5 (1-200)||(29963113-29963312)
chr5 (1-200)||(30011486-30011685)
chr5 (1-200)||(29952008-29952207)
chr5 (1-165)||(29943922-29944086)


Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 29999621 - 29999422
Alignment:
Q  1 tctctacaatctcactaacattcacaacctcaccttccaaagaagctttcttcaaagtgttaaccaaaacacccaactcctcttttctaataggacccga 100  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29999621 tctcgacaatctcactaacattcacaacctcacctaccaaagaagctttcttcaaagtgttaaccaaaacacccaactcctcttttctaataggacccga 29999522  T
Q  101 cttctcaacgtttgaagcactaagaagtttcaaagtgcaaaatttcctcatactgcgccaataaggaccatactcagaaaaaggcaaccctttagaacca 200  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29999521 cttctcaacttttgaagcactaagaagtttcaaagtgcaaaatttcctcatactgcgccaataaggaccatactcagaaaaaggcaaccctttagaacca 29999422  T

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Target: chr5; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 30045095 - 30045294
Alignment:
Q  1 tctctacaatctcactaacattcacaacctcaccttccaaagaagctttcttcaaagtgttaaccaaaacacccaactcctcttttctaataggacccga 100  Q
    ||||||||| ||||||||||||||||||||||||  |||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||| ||    
T  30045095 tctctacaacctcactaacattcacaacctcaccaaccaaagcagctttcttcaaagtgttaaccaaaatactcaactcctcttttctaataggaccaga 30045194  T
Q  101 cttctcaacgtttgaagcactaagaagtttcaaagtgcaaaatttcctcatactgcgccaataaggaccatactcagaaaaaggcaaccctttagaacca 200  Q
    | ||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||| || |||||| ||||||    
T  30045195 catctcaacttttgaagcactaagaagtttcaaagtgcaaaatttcctcacactacgccaataaggaccatactcacaaaaagccatccctttggaacca 30045294  T

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Target: chr5; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 30070925 - 30071106
Alignment:
Q  1 tctctacaatctcactaacattcacaacctcaccttccaaagaagctttcttcaaagtgttaaccaaaacacccaactcctcttttctaataggacccga 100  Q
    ||||||| | ||||||||||||||||||||||||  |||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||| ||    
T  30070925 tctctactacctcactaacattcacaacctcaccaaccaaagcagctttcttcaaagtgttaaccaaaatactcaactcctcttttctaataggaccaga 30071024  T
Q  101 cttctcaacgtttgaagcactaagaagtttcaaagtgcaaaatttcctcatactgcgccaataaggaccatactcagaaaaa 182  Q
    | ||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||    
T  30071025 catctcaacttttgaagcactaagaagtttcaaagtgcaaaatttcctcacactacgccaataaggaccatagtcagaaaaa 30071106  T

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Target: chr5; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 29990917 - 29990725
Alignment:
Q  1 tctctacaatctcactaacattcacaacctcaccttccaaagaagctttcttcaaagtgttaaccaaaacacccaactcctcttttctaataggacccga 100  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  29990917 tctctacaatctcactgacattcacaacctcacctaccaaagaagcttttttcaaagtgttaaccaaaatacccaactcctctgttctaataggacccga 29990818  T
Q  101 cttctcaacgtttgaagcactaagaagtttcaaagtgcaaaatttcctcatactgcgccaataaggaccatactcagaaaaaggcaacccttt 193  Q
    ||||||||| ||||||||||||||||||||||||||||| | |||| | | ||| |||||||||||  | |||| |||||| | |||||||||    
T  29990817 cttctcaacttttgaagcactaagaagtttcaaagtgcagagtttctttacactacgccaataagggtcgtacttagaaaacgccaacccttt 29990725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 30006059 - 30005860
Alignment:
Q  1 tctctacaatctcactaacattcacaacctcaccttccaaagaagctttcttcaaagtgttaaccaaaacacccaactcctcttttctaataggacccga 100  Q
    ||||||||| |||||||||||||||||||||||| ||||| | |||||||| |||||   ||||||||||| |||||| ||| || |||||||||||  |    
T  30006059 tctctacaacctcactaacattcacaacctcaccctccaaggcagctttctccaaagatataaccaaaacatccaacttctccttcctaataggaccaaa 30005960  T
Q  101 cttctcaacgtttgaagcactaagaagtttcaaagtgcaaaatttcctcatactgcgccaataaggaccatactcagaaaaaggcaaccctttagaacca 200  Q
    | ||||||| ||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| || |||||| ||||||    
T  30005959 catctcaacttttgaagcactaaaaagtttcaaagtgcaaaatttcctcacactacgccaataaggaccatactcagaaaaagccatccctttggaacca 30005860  T

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Target: chr5; HSP #6
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 29963312 - 29963113
Alignment:
Q  1 tctctacaatctcactaacattcacaacctcaccttccaaagaagctttcttcaaagtgttaaccaaaacacccaactcctcttttctaataggacccga 100  Q
    ||||||||||||||||||||||||||||||||||| |||||  | ||||||  || |  |||||||||||| |||||||||  || |||||||||||  |    
T  29963312 tctctacaatctcactaacattcacaacctcacctaccaaaacaactttctctaatgacttaaccaaaacatccaactccttcttcctaataggaccaaa 29963213  T
Q  101 cttctcaacgtttgaagcactaagaagtttcaaagtgcaaaatttcctcatactgcgccaataaggaccatactcagaaaaaggcaaccctttagaacca 200  Q
    | ||||||| ||||||||||||||||||||||||||||||| |||| | | ||| |||||||||||||||||||||||||||| ||||||||| ||||||    
T  29963212 catctcaacttttgaagcactaagaagtttcaaagtgcaaagtttctttacactacgccaataaggaccatactcagaaaaagccaaccctttggaacca 29963113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 30011486 - 30011685
Alignment:
Q  1 tctctacaatctcactaacattcacaacctcaccttccaaagaagctttcttcaaagtgttaaccaaaacacccaactcctcttttctaataggacccga 100  Q
    ||||||||||||||||||||||||||||||||||| |||||  | ||||||  || |  |||||||||||| |||||||||  || |||||||||||  |    
T  30011486 tctctacaatctcactaacattcacaacctcacctaccaaaacaactttctctaatgacttaaccaaaacatccaactccttcttcctaataggaccaaa 30011585  T
Q  101 cttctcaacgtttgaagcactaagaagtttcaaagtgcaaaatttcctcatactgcgccaataaggaccatactcagaaaaaggcaaccctttagaacca 200  Q
    | ||||||| ||||||||||||||||||||||||||||||| |||| | | ||| |||||||||||||||||||||||||||| ||||||||| ||||||    
T  30011586 catctcaacttttgaagcactaagaagtttcaaagtgcaaagtttctttacactacgccaataaggaccatactcagaaaaagccaaccctttggaacca 30011685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 29952207 - 29952008
Alignment:
Q  1 tctctacaatctcactaacattcacaacctcaccttccaaagaagctttcttcaaagtgttaaccaaaacacccaactcctcttttctaataggacccga 100  Q
    ||||||||| |||||||||||||||||||||||   |||||| |||||||| ||| |  |||| ||||||| ||||||  || || ||||||| |||  |    
T  29952207 tctctacaacctcactaacattcacaacctcactcaccaaagcagctttctccaatgacttaatcaaaacatccaacttttccttcctaatagaaccaaa 29952108  T
Q  101 cttctcaacgtttgaagcactaagaagtttcaaagtgcaaaatttcctcatactgcgccaataaggaccatactcagaaaaaggcaaccctttagaacca 200  Q
    | ||||||| |||||||||||||||||||| |||||||||| |||||||| ||| ||||||||||||||||||| |||||||| ||||||||| ||||||    
T  29952107 catctcaacttttgaagcactaagaagttttaaagtgcaaagtttcctcacactacgccaataaggaccatacttagaaaaagccaaccctttggaacca 29952008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 29944086 - 29943922
Alignment:
Q  1 tctctacaatctcactaacattcacaacctcaccttccaaagaagctttcttcaaagtgttaaccaaaacacccaactcctcttttctaataggacccga 100  Q
    ||||||||  |||||||||||||||||||||||| |||| || |||||||| |||||  |||||||||||| |||||| ||| || |||||||||||  |    
T  29944086 tctctacagcctcactaacattcacaacctcaccctccagagcagctttctccaaagatttaaccaaaacatccaacttctccttcctaataggaccaaa 29943987  T
Q  101 cttctcaacgtttgaagcactaagaagtttcaaagtgcaaaatttcctcatactgcgccaataag 165  Q
    | ||||||| || |||||||||||||||||  |||| |||| ||| |||| ||| ||||||||||    
T  29943986 catctcaactttcgaagcactaagaagttttgaagtacaaagttttctcacactacgccaataag 29943922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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