View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19163_low_10 (Length: 474)
Name: NF19163_low_10
Description: NF19163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19163_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 15 - 458
Target Start/End: Original strand, 8843465 - 8843908
Alignment:
| Q |
15 |
cacagaagctaaagtagcctcagcaaagagcattcatttctctcagaaatcaacaacaacaattatggcctttagtaaaagctttcacaagtctgaacat |
114 |
Q |
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| T |
8843465 |
cacagaagctaaagtagcctcagcaaagagcattcatttctctcagaaatcaacaacaacaattatggccttcagtaaaagctttcacaagtctgaacat |
8843564 |
T |
|
| Q |
115 |
taaactatcttttctaaacaaaaaacagtttcctttccttgcaatacaattaaaggttatacaatgaattggaagagcacaaaagtttgattgcccgagg |
214 |
Q |
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| T |
8843565 |
taaactatcttttctaaacaaaaaacagtttcctttccttgcaatacaattaaaggttatacaatgaattggaagagcacaaaagtttgattgcccgagg |
8843664 |
T |
|
| Q |
215 |
aagcatgttaacaaacaccccttttacttttcactccccccaattccttaaagtaaagactctgtcccttacccacatctcaaataatttaataagtacg |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8843665 |
aagcatgttaacaaacaccccttttacttttcactccccccaattccttaaagtaaagactctgtcccttacccacatctcaaataatttaataagtacg |
8843764 |
T |
|
| Q |
315 |
ttctgataaagcatttcttattactcgagaggtgcacaacataaaggggagtaactagtaactaccattccaacaaccagctaggacaattcccactaaa |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8843765 |
ttctgataaagcatttcttattactcgagaggtgcacaacataaaggggagtaactagtaactaccattccaacaaccagctaggacaattcccactaag |
8843864 |
T |
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| Q |
415 |
gagaatatgtcaagttccaactcctaaatcttaaccgaaagtca |
458 |
Q |
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| T |
8843865 |
gagaatatgtcaagttccaactcctaaatcttaaccgaaagtca |
8843908 |
T |
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