View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19163_low_15 (Length: 404)
Name: NF19163_low_15
Description: NF19163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19163_low_15 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 387
Target Start/End: Original strand, 35428441 - 35428824
Alignment:
| Q |
1 |
aaatacttctataatcatgtgaattaaaaacgacacctaaatgagaatcaaaccaaacctattatgaccattgacattccatgaagagctagaggtgaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
35428441 |
aaatacttctataatcatgtgaattaaaaacgacacctaaatgagaaccaaaccaaacctattatgaccattgacattccatgaagag----aggtgaaa |
35428536 |
T |
|
| Q |
101 |
ttgtctcattagtttatctnnnnnnncacacaatgggtcacaattaatttatttttaaacaaataattttctgatggtaattttgtgggagaatcctcga |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
35428537 |
ttgtctcattagtttatctaaaaaaacacacaatgggtcacaattaatttctttttaaagaaataattttctgttggtaattttgtgggagaatcctcga |
35428636 |
T |
|
| Q |
201 |
aacaaaatagatgtatcttgaaatagtttaaattttcctcaatttttccatactttttgttcaagatcttgcaccgaattatagagctaaaataatcttc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
35428637 |
aacaaaatagatgtatcttgaaatagtttaaattttcctcaatttttccatactttttgttcaagatcttgcgccgaattatagagctaaaataattttc |
35428736 |
T |
|
| Q |
301 |
catc-aaggatatttatagaaaaagatataagtataattttggtatctttctcatcattatttttctccaatctttccgtgtatatat |
387 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
35428737 |
catcaaaggatatttgtagaaaaagatataagtataattttggtatctttctcattattatttttctccaatctttccgtgtatatat |
35428824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 8 - 387
Target Start/End: Original strand, 35419314 - 35419691
Alignment:
| Q |
8 |
tctataatcatgtgaattaaaaacgacacctaaatgagaatcaaaccaaacctattatgaccattgacattccatgaagagctagaggtgaaattgtctc |
107 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
35419314 |
tctagaatcatgtgaattaaaaacgacacctaaatgagaatcaaaccaatgttattttgaccattgacattccatgaagtg----aggtgaaattgtcta |
35419409 |
T |
|
| Q |
108 |
attagtttatctnnnnnnncacaca--atgggtcacaattaatttatttttaaacaaataattttctgatggtaattttgtg-ggagaatcctcgaaaca |
204 |
Q |
| |
|
|||| ||| | | |||||| ||||||||||||| |||||||||||||||||||||||| | ||||||||||||| |||||| |||||||||| |
|
|
| T |
35419410 |
attattttgtataaaaaatcacacacaatgggtcacaattgatttatttttaaacaaataattttttattggtaattttgtgtggagaaacctcgaaaca |
35419509 |
T |
|
| Q |
205 |
aaatagatgtatcttgaaatagtttaaattttcctcaatttttccatactttttgttcaagatcttgcaccgaattatagagctaaaataatcttccatc |
304 |
Q |
| |
|
|||||||| |||||| ||||||||| ||||||||||| ||||||||||| |||| | ||||||||||| || ||||||||||||| |||||||| ||||| |
|
|
| T |
35419510 |
aaatagatctatcttaaaatagttttaattttcctcagtttttccatacattttat-caagatcttgcgccaaattatagagctagaataatctgccatc |
35419608 |
T |
|
| Q |
305 |
aaggatatttatagaaaaagatataagtataattttggtatctttctcatcattatttttctccaatctttccgtgtatatat |
387 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
35419609 |
aaggatatttgtagaaaaaggtataagtataattttggtatctgtctcattattatttttctccaacctttccgtgtatatat |
35419691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 16436312 - 16436406
Alignment:
| Q |
13 |
aatcatgtgaattaaaaacgacacctaaatgagaatcaaaccaaacctattatgaccattgacattccatgaagagctagaggtgaaattgtctcatta |
111 |
Q |
| |
|
||||||| |||||||| || ||||||||| |||| ||||||| ||||| | |||||| ||||||||||| ||||| | ||||||||||||||||| |
|
|
| T |
16436312 |
aatcatgcgaattaaataccacacctaaagaagaagcaaaccatacctactttgaccaatgacattccataaagaggt----gtgaaattgtctcatta |
16436406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University