View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19163_low_17 (Length: 381)

Name: NF19163_low_17
Description: NF19163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19163_low_17
NF19163_low_17
[»] chr2 (13 HSPs)
chr2 (14-362)||(5163473-5163822)
chr2 (14-85)||(34909438-34909509)
chr2 (16-95)||(34345847-34345926)
chr2 (30-105)||(2887142-2887217)
chr2 (23-68)||(16647942-16647987)
chr2 (14-63)||(28556704-28556752)
chr2 (10-70)||(40877020-40877080)
chr2 (17-68)||(30257883-30257934)
chr2 (14-56)||(4206661-4206703)
chr2 (13-56)||(17271361-17271404)
chr2 (10-49)||(18197333-18197372)
chr2 (17-64)||(37911412-37911459)
chr2 (25-65)||(15925456-15925496)
[»] chr6 (10 HSPs)
chr6 (10-95)||(10668973-10669058)
chr6 (14-73)||(4337990-4338049)
chr6 (14-70)||(12174294-12174350)
chr6 (19-66)||(13229285-13229332)
chr6 (18-65)||(34969375-34969422)
chr6 (17-54)||(33344786-33344823)
chr6 (14-95)||(34329911-34329992)
chr6 (17-54)||(35122053-35122090)
chr6 (17-56)||(13481670-13481709)
chr6 (10-44)||(6274026-6274060)
[»] chr8 (17 HSPs)
chr8 (14-107)||(13236100-13236194)
chr8 (10-64)||(13580453-13580507)
chr8 (14-108)||(22930257-22930351)
chr8 (17-64)||(9191180-9191227)
chr8 (14-65)||(26835693-26835744)
chr8 (10-67)||(4350766-4350823)
chr8 (10-95)||(38075781-38075865)
chr8 (14-68)||(28376632-28376687)
chr8 (10-57)||(39612712-39612759)
chr8 (10-83)||(7255361-7255434)
chr8 (14-68)||(34142000-34142054)
chr8 (20-50)||(40620745-40620775)
chr8 (10-43)||(12181824-12181857)
chr8 (10-43)||(12426252-12426285)
chr8 (19-56)||(43872466-43872503)
chr8 (10-42)||(21348449-21348481)
chr8 (10-50)||(31383468-31383508)
[»] chr4 (18 HSPs)
chr4 (14-108)||(23869983-23870077)
chr4 (14-92)||(6137156-6137234)
chr4 (13-64)||(12320383-12320435)
chr4 (15-56)||(7540513-7540554)
chr4 (16-95)||(35372204-35372282)
chr4 (14-105)||(36071656-36071747)
chr4 (14-108)||(7853231-7853325)
chr4 (10-52)||(47059682-47059724)
chr4 (10-52)||(47082078-47082120)
chr4 (12-65)||(25790443-25790495)
chr4 (16-56)||(55236269-55236309)
chr4 (14-69)||(5627471-5627526)
chr4 (25-68)||(43517423-43517466)
chr4 (18-64)||(8733167-8733213)
chr4 (14-68)||(29118447-29118501)
chr4 (14-66)||(3643244-3643294)
chr4 (14-50)||(38087653-38087689)
chr4 (19-55)||(55147930-55147966)
[»] chr3 (9 HSPs)
chr3 (19-108)||(52706765-52706854)
chr3 (14-65)||(27541167-27541218)
chr3 (15-68)||(33510197-33510251)
chr3 (10-53)||(18257981-18258024)
chr3 (14-68)||(11383568-11383621)
chr3 (10-47)||(17713273-17713310)
chr3 (10-47)||(19014502-19014539)
chr3 (15-56)||(54417122-54417163)
chr3 (17-108)||(15670854-15670945)
[»] chr7 (16 HSPs)
chr7 (17-68)||(30095862-30095913)
chr7 (14-68)||(35812590-35812644)
chr7 (10-83)||(26914438-26914510)
chr7 (13-95)||(3940749-3940831)
chr7 (17-56)||(21292832-21292871)
chr7 (14-56)||(15134550-15134592)
chr7 (10-60)||(40351863-40351913)
chr7 (14-56)||(49164865-49164907)
chr7 (25-77)||(1694144-1694196)
chr7 (10-70)||(13431759-13431819)
chr7 (10-61)||(9429431-9429482)
chr7 (25-68)||(21828137-21828180)
chr7 (21-56)||(36066101-36066136)
chr7 (17-56)||(37996497-37996536)
chr7 (14-68)||(12177785-12177836)
chr7 (10-46)||(31329682-31329718)
[»] chr5 (11 HSPs)
chr5 (14-68)||(7887286-7887340)
chr5 (11-61)||(32257781-32257831)
chr5 (14-66)||(12263747-12263799)
chr5 (10-73)||(3597007-3597069)
chr5 (14-69)||(20870609-20870664)
chr5 (14-65)||(39542389-39542440)
chr5 (10-74)||(502775-502838)
chr5 (14-57)||(10325731-10325774)
chr5 (18-61)||(16570599-16570642)
chr5 (17-68)||(18600168-18600219)
chr5 (12-65)||(18916026-18916079)
[»] chr1 (12 HSPs)
chr1 (14-108)||(23897994-23898088)
chr1 (15-95)||(10976216-10976296)
chr1 (14-64)||(1240407-1240457)
chr1 (14-110)||(8246819-8246913)
chr1 (14-109)||(23935123-23935218)
chr1 (21-68)||(35405300-35405346)
chr1 (11-106)||(45385332-45385427)
chr1 (10-47)||(35204310-35204347)
chr1 (19-83)||(22667683-22667747)
chr1 (17-64)||(40869-40916)
chr1 (11-68)||(3265561-3265618)
chr1 (11-51)||(1153820-1153860)
[»] scaffold0001 (1 HSPs)
scaffold0001 (14-66)||(65016-65067)


Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 14 - 362
Target Start/End: Complemental strand, 5163822 - 5163473
Alignment:
Q  14 tactaactactaagtaaaaataataattttgatgcccctaaaataatggtgccctagactgtcgtccctcccgtccaccctctggaccacccctgtccat 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  5163822 tactaactactaagtaaaaataataattttgatgcccctaaaataatagtgccctaggctgtcgtccctcccgcccaccctctggaccacccctgtccat 5163723  T
Q  114 gtcttacaaatttcccctgctttgtgcaccactattttcctttgnnnnnnnaaa-gtgatttaattgctttaagatttgacaacttgttcttactttcca 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||       ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  5163722 gtcttacaaatttcccctgctttgtgcaccactattttcctttgtttttttaaaagtgatttaattgctttaagatttgacaacttgttcttactttcca 5163623  T
Q  213 ttttttaaggtggctttgttgctaattcaatttcaaaaagataaaaagtattagatgccatgtacatatgagagggagaggcaccatttcttctactaca 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  5163622 ttttttaaggtggctttgttgctaattcaatttcaaaaagataaaaagtattagatgccatgtacatatgagagggagaggcaccatttctactactaca 5163523  T
Q  313 ttcccaccaaaaagatgcctttcaatgttcatagaatagaaggttcaatt 362  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  5163522 ttcccaccaaaaagatgcctttcaatgttcaaagaatagaaggttcaatt 5163473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 85
Target Start/End: Original strand, 34909438 - 34909509
Alignment:
Q  14 tactaactactaagtaaaaataataattttgatgcccctaaaataatggtgccctagactgtcgtccctccc 85  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||||||| |||| | ||| ||||||||||    
T  34909438 tactaactagtaagtaaaaataataattttaatgcccctaaaataatggtaccctgggctgccgtccctccc 34909509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 16 - 95
Target Start/End: Complemental strand, 34345926 - 34345847
Alignment:
Q  16 ctaactactaagtaaaaataataattttgatgcccctaaaataatggtgccctagactgtcgtccctcccgtccaccctc 95  Q
    ||||||||||||||||||||||||||||||| ||||| |||| |||||| |||| |||  ||||||||||| ||| ||||    
T  34345926 ctaactactaagtaaaaataataattttgattcccctcaaattatggtgtcctaaactaccgtccctcccgcccatcctc 34345847  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 105
Target Start/End: Original strand, 2887142 - 2887217
Alignment:
Q  30 aaaataataattttgatgcccctaaaataatggtgccctagactgtcgtccctcccgtccaccctctggaccaccc 105  Q
    ||||||||||||||| | |||||||||||||||||||||||| || || |||||||  |||||||| || ||||||    
T  2887142 aaaataataattttggtacccctaaaataatggtgccctagattgccgcccctcccacccaccctcagggccaccc 2887217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 16647942 - 16647987
Alignment:
Q  23 ctaagtaaaaataataattttgatgcccctaaaataatggtgccct 68  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||    
T  16647942 ctaaataaaaataataattttgatgcccctaaaaaaatggtgccct 16647987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 28556704 - 28556752
Alignment:
Q  14 tactaactactaagtaaaaataataattttgatgcccctaaaataatggt 63  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  28556704 tactaactactaagtaaaaataataattttg-tgcgcctaaaataatggt 28556752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 40877020 - 40877080
Alignment:
Q  10 ataatactaactactaagtaaaaataataattttgatgcccctaaaataatggtgccctag 70  Q
    |||||||||||||| |||||||||||||||||||| || |||||||| | |||| ||||||    
T  40877020 ataatactaactaccaagtaaaaataataattttggtgtccctaaaaaattggtaccctag 40877080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 30257883 - 30257934
Alignment:
Q  17 taactactaagtaaaaataataattttgatgcccctaaaataatggtgccct 68  Q
    |||||| |||||||||| |||||||||||||||  |||||||||||||||||    
T  30257883 taactattaagtaaaaaaaataattttgatgcctttaaaataatggtgccct 30257934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 4206661 - 4206703
Alignment:
Q  14 tactaactactaagtaaaaataataattttgatgcccctaaaa 56  Q
    |||||||||||||||||| |||||||||||| |||||||||||    
T  4206661 tactaactactaagtaaatataataattttggtgcccctaaaa 4206703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 17271361 - 17271404
Alignment:
Q  13 atactaactactaagtaaaaataataattttgatgcccctaaaa 56  Q
    ||||| |||||||||||||||||||||||||| | |||||||||    
T  17271361 atactgactactaagtaaaaataataattttggtacccctaaaa 17271404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 18197372 - 18197333
Alignment:
Q  10 ataatactaactactaagtaaaaataataattttgatgcc 49  Q
    |||||||||||||  |||||||||||||||||||||||||    
T  18197372 ataatactaactatcaagtaaaaataataattttgatgcc 18197333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 37911459 - 37911412
Alignment:
Q  17 taactactaagtaaaaataataattttgatgcccctaaaataatggtg 64  Q
    ||||||||||| |||||||||||||||| ||||||||||  |||||||    
T  37911459 taactactaagcaaaaataataattttggtgcccctaaataaatggtg 37911412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 15925496 - 15925456
Alignment:
Q  25 aagtaaaaataataattttgatgcccctaaaataatggtgc 65  Q
    |||||||||||||||||||||| ||||| ||| ||||||||    
T  15925496 aagtaaaaataataattttgataccccttaaaaaatggtgc 15925456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 6e-22; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 10 - 95
Target Start/End: Original strand, 10668973 - 10669058
Alignment:
Q  10 ataatactaactactaagtaaaaataataattttgatgcccctaaaataatggtgccctagactgtcgtccctcccgtccaccctc 95  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||| |||||  | |||||||| ||||||||    
T  10668973 ataatactaactaataagtaaaaataataattttggtgcccctaaaaaaatggtgccctggactgctgcccctcccgcccaccctc 10669058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 4337990 - 4338049
Alignment:
Q  14 tactaactactaagtaaaaataataattttgatgcccctaaaataatggtgccctagact 73  Q
    ||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||    
T  4337990 tactaactactaagtaaaagtaataattttggtgcccataaaataatggtgccctagact 4338049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 12174350 - 12174294
Alignment:
Q  14 tactaactactaagtaaaaataataattttgatgcccctaaaataatggtgccctag 70  Q
    ||||||||||||||||||||||||||||||| |||| || ||| |||||||||||||    
T  12174350 tactaactactaagtaaaaataataattttggtgcctcttaaaaaatggtgccctag 12174294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 13229332 - 13229285
Alignment:
Q  19 actactaagtaaaaataataattttgatgcccctaaaataatggtgcc 66  Q
    |||||||||||||||||||||||||| |||| |||||| |||||||||    
T  13229332 actactaagtaaaaataataattttggtgcctctaaaaaaatggtgcc 13229285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 34969422 - 34969375
Alignment:
Q  18 aactactaagtaaaaataataattttgatgcccctaaaataatggtgc 65  Q
    ||||||||||||||||||||||||||||||||| ||||| ||| ||||    
T  34969422 aactactaagtaaaaataataattttgatgcccttaaaaaaatagtgc 34969375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 33344823 - 33344786
Alignment:
Q  17 taactactaagtaaaaataataattttgatgcccctaa 54  Q
    |||||||||||||||||||||||||||| |||||||||    
T  33344823 taactactaagtaaaaataataattttggtgcccctaa 33344786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 95
Target Start/End: Original strand, 34329911 - 34329992
Alignment:
Q  14 tactaactactaagtaaaaataataattttgatgcccctaaaataatggtgccctagactgtcgtccctcccgtccaccctc 95  Q
    |||||||  |||||||||||||||||||||  |||||||| || ||||||| |||  |||| || | |||||||||||||||    
T  34329911 tactaaccgctaagtaaaaataataattttactgcccctataaaaatggtgtcctgaactgccgcctctcccgtccaccctc 34329992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 35122053 - 35122090
Alignment:
Q  17 taactactaagtaaaaataataattttgatgcccctaa 54  Q
    |||||||||||||||||||||||||||| |||||||||    
T  35122053 taactactaagtaaaaataataattttggtgcccctaa 35122090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 13481670 - 13481709
Alignment:
Q  17 taactactaagtaaaaataataattttgatgcccctaaaa 56  Q
    ||||||||| | ||||||||||||||||||||||||||||    
T  13481670 taactactacggaaaaataataattttgatgcccctaaaa 13481709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 44
Target Start/End: Original strand, 6274026 - 6274060
Alignment:
Q  10 ataatactaactactaagtaaaaataataattttg 44  Q
    ||||||||||||||||||| |||||||||||||||    
T  6274026 ataatactaactactaagttaaaataataattttg 6274060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 14 - 107
Target Start/End: Complemental strand, 13236194 - 13236100
Alignment:
Q  14 tactaactactaagtaaaaa-taataattttgatgcccctaaaataatggtgccctagactgtcgtccctcccgtccaccctctggaccacccct 107  Q
    |||||||||||||||||||| ||||||||||| ||||||| ||| |||||||||||||  ||||| |||||| | |||||||| ||||| |||||    
T  13236194 tactaactactaagtaaaaaataataattttggtgccccttaaacaatggtgccctaggttgtcgcccctcctgcccaccctcaggacctcccct 13236100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 64
Target Start/End: Original strand, 13580453 - 13580507
Alignment:
Q  10 ataatactaactactaagtaaaaataataattttgatgcccctaaaataatggtg 64  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||    
T  13580453 ataatactaactattaagtaaaaataataattttggtgcccctaaaaaaatggtg 13580507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 108
Target Start/End: Complemental strand, 22930351 - 22930257
Alignment:
Q  14 tactaactactaagtaaaaataataattttgatgcccctaaaataatggtgccctagactgtcgtccctcccgtccaccctctggaccacccctg 108  Q
    ||||||||| ||||||||||| ||||||||| ||||||| ||| ||||||||||| |||||||| ||||  || || ||||| |||| |||||||    
T  22930351 tactaactattaagtaaaaattataattttggtgcccctgaaaaaatggtgccctggactgtcgccccttgcgcccgccctcaggacaacccctg 22930257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 9191227 - 9191180
Alignment:
Q  17 taactactaagtaaaaataataattttgatgcccctaaaataatggtg 64  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||||    
T  9191227 taactactaagtaaaaataataattttgatgctcctaaaaaaatggtg 9191180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 26835693 - 26835744
Alignment:
Q  14 tactaactactaagtaaaaataataattttgatgcccctaaaataatggtgc 65  Q
    ||||||||| ||||||||||||||||||||| ||||||||||| ||||||||    
T  26835693 tactaactattaagtaaaaataataattttggtgcccctaaaaaaatggtgc 26835744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 67
Target Start/End: Original strand, 4350766 - 4350823
Alignment:
Q  10 ataatactaactactaagtaaaaataataattttgatgcccctaaaataatggtgccc 67  Q
    ||||||||||||||||| ||||||||||||||||| |||| |||||| | ||||||||    
T  4350766 ataatactaactactaaataaaaataataattttggtgcctctaaaaaagtggtgccc 4350823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 95
Target Start/End: Original strand, 38075781 - 38075865
Alignment:
Q  10 ataatactaactactaagtaaaaataataattttgatgcccctaaaataatggtgccctagactgtcgtccctcccgtccaccctc 95  Q
    |||| |||||| |||||||||||||||||||||||||| |||||||| ||||||| ||| |||  ||  ||||||| |||||||||    
T  38075781 ataacactaacaactaagtaaaaataataattttgatgtccctaaaa-aatggtgtcctggacgatcacccctcccatccaccctc 38075865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 28376687 - 28376632
Alignment:
Q  14 tactaactactaagtaaaaataataattttgatgcccct-aaaataatggtgccct 68  Q
    ||||||||||||||||||||||||||||||| |||| || |||| |||||||||||    
T  28376687 tactaactactaagtaaaaataataattttggtgccgctaaaaaaaatggtgccct 28376632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 39612712 - 39612759
Alignment:
Q  10 ataatactaactactaagtaaaaataataattttgatgcccctaaaat 57  Q
    ||||||||||||| |||||||||||||| ||||| |||||||||||||    
T  39612712 ataatactaactagtaagtaaaaataatcattttcatgcccctaaaat 39612759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 83
Target Start/End: Complemental strand, 7255434 - 7255361
Alignment:
Q  10 ataatactaactactaagtaaaaataataattttgatgcccctaaaataatggtgccctagactgtcgtccctc 83  Q
    ||||||||||| |||||||||||||| ||||||| |||||| |||||  |||||||  | ||| ||||||||||    
T  7255434 ataatactaaccactaagtaaaaatattaattttaatgcccttaaaaatatggtgcttttgacggtcgtccctc 7255361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 34142054 - 34142000
Alignment:
Q  14 tactaactactaagtaaaaataataattttgatgcccctaaaataatggtgccct 68  Q
    ||||||||||||| ||||||||||| ||||| ||||||||| | | |||||||||    
T  34142054 tactaactactaaataaaaataatagttttggtgcccctaacaaagtggtgccct 34142000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 50
Target Start/End: Original strand, 40620745 - 40620775
Alignment:
Q  20 ctactaagtaaaaataataattttgatgccc 50  Q
    |||||||||||||||||||||||||||||||    
T  40620745 ctactaagtaaaaataataattttgatgccc 40620775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 43
Target Start/End: Complemental strand, 12181857 - 12181824
Alignment:
Q  10 ataatactaactactaagtaaaaataataatttt 43  Q
    |||||||||| |||||||||||||||||||||||    
T  12181857 ataatactaattactaagtaaaaataataatttt 12181824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 43
Target Start/End: Complemental strand, 12426285 - 12426252
Alignment:
Q  10 ataatactaactactaagtaaaaataataatttt 43  Q
    |||||||||| |||||||||||||||||||||||    
T  12426285 ataatactaattactaagtaaaaataataatttt 12426252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 43872503 - 43872466
Alignment:
Q  19 actactaagtaaaaataataattttgatgcccctaaaa 56  Q
    |||||||||||||||||||||| | |||||||||||||    
T  43872503 actactaagtaaaaataataatatggatgcccctaaaa 43872466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 42
Target Start/End: Original strand, 21348449 - 21348481
Alignment:
Q  10 ataatactaactactaagtaaaaataataattt 42  Q
    ||||||||||||||||||||||||||| |||||    
T  21348449 ataatactaactactaagtaaaaataagaattt 21348481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 31383508 - 31383468
Alignment:
Q  10 ataatactaactactaagtaaaaataataattttgatgccc 50  Q
    |||||| |||||| |||| ||||||||||||||||||||||    
T  31383508 ataatattaactattaagaaaaaataataattttgatgccc 31383468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 14 - 108
Target Start/End: Complemental strand, 23870077 - 23869983
Alignment:
Q  14 tactaactactaagtaaaaataataattttgatgcccctaaaataatggtgccctagactgtcgtccctcccgtccaccctctggaccacccctg 108  Q
    ||||||||||||||||||||||||||||||| ||||||||||| | ||||||||| | |||||| |||||  | || ||||| || |||||||||    
T  23870077 tactaactactaagtaaaaataataattttggtgcccctaaaaaagtggtgccctgggctgtcgcccctcgagcccgccctcagggccacccctg 23869983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 92
Target Start/End: Complemental strand, 6137234 - 6137156
Alignment:
Q  14 tactaactactaagtaaaaataataattttgatgcccctaaaataatggtgccctagactgtcgtccctcccgtccacc 92  Q
    ||||||||||||| |||||||||||||||| |||| ||||||| ||||||| ||| ||||| || ||||| ||||||||    
T  6137234 tactaactactaaataaaaataataattttaatgctcctaaaaaaatggtgtcctggactgccgcccctctcgtccacc 6137156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 12320435 - 12320383
Alignment:
Q  13 atactaactactaagtaaaaa-taataattttgatgcccctaaaataatggtg 64  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  12320435 atactaactactaagtaaaaagtaataattttcatgcccctaaaataatggtg 12320383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 7540513 - 7540554
Alignment:
Q  15 actaactactaagtaaaaataataattttgatgcccctaaaa 56  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  7540513 actaactaataagtaaaaataataattttgatgcccctaaaa 7540554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 95
Target Start/End: Original strand, 35372204 - 35372282
Alignment:
Q  16 ctaactactaagtaaaaataataattttgatgcccctaaaataatggtgccctagactgtcgtccctcccgtccaccctc 95  Q
    |||||||||||||||||||||||| ||||||| |||||||||||  ||||||||| ||  |  ||||| |||||||||||    
T  35372204 ctaactactaagtaaaaataataa-tttgatgtccctaaaataacagtgccctaggcttccacccctcacgtccaccctc 35372282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 105
Target Start/End: Original strand, 36071656 - 36071747
Alignment:
Q  14 tactaactactaagtaaaaataataattttgatgcccctaaaataatggtgccctagactgtcgtccctcccgtccaccctctggaccaccc 105  Q
    |||||||||  |||||||||||||||||||  |||||||| || ||||||  ||| ||||| || |||||||| ||||||| ||| ||||||    
T  36071656 tactaactatcaagtaaaaataataattttagtgcccctagaaaaatggtaacctggactgccgcccctcccgcccaccctttgggccaccc 36071747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 108
Target Start/End: Complemental strand, 7853325 - 7853231
Alignment:
Q  14 tactaactactaagtaaaaataataattttgatgcccctaaaataatggtgccctagactgtcgtccctcccgtccaccctctggaccacccctg 108  Q
    |||||||||||||||||||||||||| |||| ||||  ||| |||||| ||||||||  || || | |||||| |||||||  || |||||||||    
T  7853325 tactaactactaagtaaaaataataaatttggtgcctgtaagataatgatgccctaggttgccgcctctcccgcccacccttagggccacccctg 7853231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 47059724 - 47059682
Alignment:
Q  10 ataatactaactactaagtaaaaataataattttgatgcccct 52  Q
    ||||||||||||| ||||||||||||||||||||| |||||||    
T  47059724 ataatactaactaataagtaaaaataataattttggtgcccct 47059682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 47082078 - 47082120
Alignment:
Q  10 ataatactaactactaagtaaaaataataattttgatgcccct 52  Q
    ||||||||||||| ||||||||||||||||||||| |||||||    
T  47082078 ataatactaactaataagtaaaaataataattttggtgcccct 47082120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 25790495 - 25790443
Alignment:
Q  12 aatactaactactaagtaaaaataataattttgatgcccctaaaataatggtgc 65  Q
    ||||||||||| ||| ||||||||||||||||| ||||||||||| ||||||||    
T  25790495 aatactaactattaaataaaaataataattttggtgcccctaaaa-aatggtgc 25790443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 55236309 - 55236269
Alignment:
Q  16 ctaactactaagtaaaaataataattttgatgcccctaaaa 56  Q
    ||||||||||| ||||||||||||||||||||||| |||||    
T  55236309 ctaactactaaataaaaataataattttgatgcccttaaaa 55236269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 5627526 - 5627471
Alignment:
Q  14 tactaactactaagtaaaaataataattttgatgcccctaaaataatggtgcccta 69  Q
    |||||||||| | |||||||||||||||||| ||||||||||| |||  |||||||    
T  5627526 tactaactaccatgtaaaaataataattttggtgcccctaaaaaaattatgcccta 5627471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 68
Target Start/End: Original strand, 43517423 - 43517466
Alignment:
Q  25 aagtaaaaataataattttgatgcccctaaaataatggtgccct 68  Q
    |||||||||||||||||||||| ||||| |||||||| ||||||    
T  43517423 aagtaaaaataataattttgattcccctcaaataatgatgccct 43517466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 8733167 - 8733213
Alignment:
Q  18 aactactaagtaaaaataataattttgatgcccctaaaataatggtg 64  Q
    ||||||||||||||| ||||||||||| ||||| ||||| |||||||    
T  8733167 aactactaagtaaaattaataattttggtgcccttaaaaaaatggtg 8733213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 29118501 - 29118447
Alignment:
Q  14 tactaactactaagtaaaaataataattttgatgcccctaaaataatggtgccct 68  Q
    ||||||||||||  ||||||||||||||||| |||||| | || |||||||||||    
T  29118501 tactaactactacataaaaataataattttggtgccccaataaaaatggtgccct 29118447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 3643244 - 3643294
Alignment:
Q  14 tactaactactaagtaaaaataataattttgatgcccctaaaataatggtgcc 66  Q
    ||||||||||||||| |||||||||||||||||| || ||||| |||||||||    
T  3643244 tactaactactaagt-aaaataataattttgatgtccttaaaa-aatggtgcc 3643294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 50
Target Start/End: Complemental strand, 38087689 - 38087653
Alignment:
Q  14 tactaactactaagtaaaaataataattttgatgccc 50  Q
    ||||||||| ||||||||||||||||||||| |||||    
T  38087689 tactaactattaagtaaaaataataattttggtgccc 38087653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 55147930 - 55147966
Alignment:
Q  19 actactaagtaaaaataataattttgatgcccctaaa 55  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  55147930 actattaagtaaaaataataattttggtgcccctaaa 55147966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 52706765 - 52706854
Alignment:
Q  19 actactaagtaaaaataataattttgatgcccctaaaataatggtgccctagactgtcgtccctcccgtccaccctctggaccacccctg 108  Q
    |||||||| ||||||||||||||||||| ||| ||||| ||||||| |||||||| ||| ||||||||||| ||||| || |||| ||||    
T  52706765 actactaaataaaaataataattttgatacccttaaaaaaatggtgtcctagactatcgcccctcccgtccgccctcagggccactcctg 52706854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 27541167 - 27541218
Alignment:
Q  14 tactaactactaagtaaaaataataattttgatgcccctaaaataatggtgc 65  Q
    |||||| |||||| ||||||||||||||||||||||||||||| | ||||||    
T  27541167 tactaattactaaataaaaataataattttgatgcccctaaaaaagtggtgc 27541218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 68
Target Start/End: Original strand, 33510197 - 33510251
Alignment:
Q  15 actaactactaagtaaaaataataattttgatg-cccctaaaataatggtgccct 68  Q
    ||||||||||||||||||||||||||||||||| ||  ||||| |||||||||||    
T  33510197 actaactactaagtaaaaataataattttgatgtccattaaaaaaatggtgccct 33510251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 18257981 - 18258024
Alignment:
Q  10 ataatactaactactaagtaaaaataataattttgatgccccta 53  Q
    ||||||||||||| |||||||||||||||| ||||||| |||||    
T  18257981 ataatactaactattaagtaaaaataataaatttgatgtcccta 18258024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 11383621 - 11383568
Alignment:
Q  14 tactaactactaagtaaaaataataattttgatgcccctaaaataatggtgccct 68  Q
    ||||||||||||| ||||||||||||||||| || |||||||| | |||||||||    
T  11383621 tactaactactaaataaaaataataattttggtg-ccctaaaaaagtggtgccct 11383568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 47
Target Start/End: Complemental strand, 17713310 - 17713273
Alignment:
Q  10 ataatactaactactaagtaaaaataataattttgatg 47  Q
    |||| ||||| |||||||||||||||||||||||||||    
T  17713310 ataaaactaattactaagtaaaaataataattttgatg 17713273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 47
Target Start/End: Complemental strand, 19014539 - 19014502
Alignment:
Q  10 ataatactaactactaagtaaaaataataattttgatg 47  Q
    |||| ||||| |||||||||||||||||||||||||||    
T  19014539 ataaaactaattactaagtaaaaataataattttgatg 19014502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 54417122 - 54417163
Alignment:
Q  15 actaactactaagtaaaaataataattttgatgcccctaaaa 56  Q
    ||||||||| ||||||||||||||||||||||| ||| ||||    
T  54417122 actaactaccaagtaaaaataataattttgatggcccgaaaa 54417163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 108
Target Start/End: Complemental strand, 15670945 - 15670854
Alignment:
Q  17 taactactaagtaaaaataataattttgatgcccctaaaataa-tggtgccctagactgtcgtccctcccgtccaccctctggaccacccctg 108  Q
    |||||||||||||||||||||||||||  |  ||| ||||||| ||||||||| ||||| |  |||||||| || ||||| || |||||||||    
T  15670945 taactactaagtaaaaataataattttactttccc-aaaataattggtgccctggactgccacccctcccgcccgccctcagggccacccctg 15670854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 30095862 - 30095913
Alignment:
Q  17 taactactaagtaaaaataataattttgatgcccctaaaataatggtgccct 68  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  30095862 taactactaagtaaaaataataattttggtgcccctaaaaaaatggtgccct 30095913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 35812644 - 35812590
Alignment:
Q  14 tactaactactaagtaaaaataataattttgatgcccctaaaataatggtgccct 68  Q
    |||||| || ||||||||||||||||||||||||||||||||| |||||||||||    
T  35812644 tactaattattaagtaaaaataataattttgatgcccctaaaaaaatggtgccct 35812590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 10 - 83
Target Start/End: Original strand, 26914438 - 26914510
Alignment:
Q  10 ataatactaactactaagtaaaaataataattttgatgcccctaaaataatggtgccctagactgtcgtccctc 83  Q
    |||||||||||||||||||||||||||||||||||||  |||||||| |||||| || ||||||| ||| ||||    
T  26914438 ataatactaactactaagtaaaaataataattttgat-accctaaaaaaatggtaccttagactgccgttcctc 26914510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 13 - 95
Target Start/End: Original strand, 3940749 - 3940831
Alignment:
Q  13 atactaactactaagtaaaaataataattttgatgcccctaaaataatggtgccctagactgtcgtccctcccgtccaccctc 95  Q
    ||||| |||||||||||||||||||||||| ||||| | ||||| |||| |||||| ||||  | | ||||||||||||||||    
T  3940749 atacttactactaagtaaaaataataatttggatgcgcttaaaaaaatgatgccctggactaccattcctcccgtccaccctc 3940831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 21292832 - 21292871
Alignment:
Q  17 taactactaagtaaaaataataattttgatgcccctaaaa 56  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  21292832 taactactaagtaaaaataataattttggtgcccctaaaa 21292871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 15134550 - 15134592
Alignment:
Q  14 tactaactactaagtaaaaataataattttgatgcccctaaaa 56  Q
    ||||| ||||||||||||||||||||||||| |||||||||||    
T  15134550 tactagctactaagtaaaaataataattttggtgcccctaaaa 15134592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 60
Target Start/End: Original strand, 40351863 - 40351913
Alignment:
Q  10 ataatactaactactaagtaaaaataataattttgatgcccctaaaataat 60  Q
    ||||||||||||||| |||||||||||||| |||| ||||| |||||||||    
T  40351863 ataatactaactactgagtaaaaataataactttggtgcccttaaaataat 40351913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 49164865 - 49164907
Alignment:
Q  14 tactaactactaagtaaaaataataattttgatgcccctaaaa 56  Q
    |||||||||||||||||||||||||||| |||||||| |||||    
T  49164865 tactaactactaagtaaaaataataattatgatgcccttaaaa 49164907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 1694144 - 1694196
Alignment:
Q  25 aagtaaaaataataattttgatgcccctaaaataatggtgccctagactgtcg 77  Q
    ||||||||||||| |||||||||| ||||||| |||||||| || ||||||||    
T  1694144 aagtaaaaataattattttgatgctcctaaaaaaatggtgctctggactgtcg 1694196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 13431759 - 13431819
Alignment:
Q  10 ataatactaactactaagtaaaaataataattttgatgcccctaaaataatggtgccctag 70  Q
    ||||||||| ||||||| ||| ||||||||||||  ||| ||||||| |||||||||||||    
T  13431759 ataatactacctactaaataagaataataattttagtgctcctaaaaaaatggtgccctag 13431819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 61
Target Start/End: Original strand, 9429431 - 9429482
Alignment:
Q  10 ataatactaactactaagtaaaaataataattttgatgcccctaaaataatg 61  Q
    ||||||||||||| ||| |||||||| |||||||| ||||||||||| ||||    
T  9429431 ataatactaactattaaataaaaatactaattttggtgcccctaaaaaaatg 9429482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 68
Target Start/End: Complemental strand, 21828180 - 21828137
Alignment:
Q  25 aagtaaaaataataattttgatgcccctaaaataatggtgccct 68  Q
    ||||||||||||||||||| |||||||||||  |||||||||||    
T  21828180 aagtaaaaataataatttttatgcccctaaagaaatggtgccct 21828137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 21 - 56
Target Start/End: Complemental strand, 36066136 - 36066101
Alignment:
Q  21 tactaagtaaaaataataattttgatgcccctaaaa 56  Q
    ||||||||||||||||||||||||||| ||||||||    
T  36066136 tactaagtaaaaataataattttgatgaccctaaaa 36066101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 37996536 - 37996497
Alignment:
Q  17 taactactaagtaaaaataataattttgatgcccctaaaa 56  Q
    |||||||||||||||||||||||||||| ||||| |||||    
T  37996536 taactactaagtaaaaataataattttggtgcccataaaa 37996497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 12177836 - 12177785
Alignment:
Q  14 tactaactactaagtaaaaataataattttgatgcccctaaaataatggtgccct 68  Q
    ||||||||||||||||||||   ||||||||||| ||||||| ||||||| ||||    
T  12177836 tactaactactaagtaaaaa---taattttgatgtccctaaactaatggtaccct 12177785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 31329682 - 31329718
Alignment:
Q  10 ataatactaactactaagtaaaaataataattttgat 46  Q
    |||||||||| ||| ||||||||||||||||||||||    
T  31329682 ataatactaattacgaagtaaaaataataattttgat 31329718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 7887286 - 7887340
Alignment:
Q  14 tactaactactaagtaaaaataataattttgatgcccctaaaataatggtgccct 68  Q
    ||||||||||||||||||||||||||||||| ||||||||||  |||||||||||    
T  7887286 tactaactactaagtaaaaataataattttggtgcccctaaaccaatggtgccct 7887340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 11 - 61
Target Start/End: Original strand, 32257781 - 32257831
Alignment:
Q  11 taatactaactactaagtaaaaataataattttgatgcccctaaaataatg 61  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||| ||||    
T  32257781 taatactaactactaagtaaaaataattattttgatgctcctaaaaaaatg 32257831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 12263747 - 12263799
Alignment:
Q  14 tactaactactaagtaaaaataataattttgatgcccctaaaataatggtgcc 66  Q
    ||||||| | ||||||||||||||||||||| ||||||||||| |||||||||    
T  12263747 tactaaccattaagtaaaaataataattttggtgcccctaaaaaaatggtgcc 12263799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 73
Target Start/End: Original strand, 3597007 - 3597069
Alignment:
Q  10 ataatactaactactaagtaaaaataataattttgatgcccctaaaataatggtgccctagact 73  Q
    |||||||||| |||||| |||||||||||||||||||  |||||||| | ||||||||||||||    
T  3597007 ataatactaattactaaataaaaataataattttgat-accctaaaaaactggtgccctagact 3597069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 20870664 - 20870609
Alignment:
Q  14 tactaactactaagtaaaaataataattttgatgcccctaaaataatggtgcccta 69  Q
    ||||||||||||| ||||||||||||||||||| | | ||||| ||||||||||||    
T  20870664 tactaactactaaataaaaataataattttgatactcttaaaaaaatggtgcccta 20870609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 39542440 - 39542389
Alignment:
Q  14 tactaactactaagtaaaaataataattttgatgcccctaaaataatggtgc 65  Q
    |||||||||||| ||||||||||||||||||||||||||  || ||||||||    
T  39542440 tactaactactacgtaaaaataataattttgatgcccctgtaaaaatggtgc 39542389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 74
Target Start/End: Complemental strand, 502838 - 502775
Alignment:
Q  10 ataatactaactactaagtaaaaataataattttgatgcccctaaaataatggtgccctagactg 74  Q
    |||||||||||| |||||||||||||||||||||||||| ||| ||| |||| || ||| |||||    
T  502838 ataatactaact-ctaagtaaaaataataattttgatgcaccttaaaaaatgatgtcctggactg 502775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 57
Target Start/End: Original strand, 10325731 - 10325774
Alignment:
Q  14 tactaactactaagtaaaaataataattttgatgcccctaaaat 57  Q
    ||||||| ||||||||||||||||||||||| ||||||| ||||    
T  10325731 tactaacaactaagtaaaaataataattttggtgcccctcaaat 10325774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 16570599 - 16570642
Alignment:
Q  18 aactactaagtaaaaataataattttgatgcccctaaaataatg 61  Q
    ||||| |||||||||||||||||||||||||| |||||| ||||    
T  16570599 aactaataagtaaaaataataattttgatgcctctaaaaaaatg 16570642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 18600219 - 18600168
Alignment:
Q  17 taactactaagtaaaaataataattttgatgcccctaaaataatggtgccct 68  Q
    |||||||||  |||||||||||||||||||||||||| || | |||||||||    
T  18600219 taactactatataaaaataataattttgatgcccctataaaattggtgccct 18600168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 18916079 - 18916026
Alignment:
Q  12 aatactaactactaagtaaaaataataattttgatgcccctaaaataatggtgc 65  Q
    ||||||||||| ||||||||| ||||||||||| | | ||||||| ||||||||    
T  18916079 aatactaactattaagtaaaagtaataattttggtactcctaaaaaaatggtgc 18916026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 108
Target Start/End: Original strand, 23897994 - 23898088
Alignment:
Q  14 tactaactactaagtaaaaataataattttgatgcccctaaaataatggtgccctagactgtcgtccctcccgtccaccctctggaccacccctg 108  Q
    ||||||||||||||||||||| ||||||||| ||||||||||| |||||| |||| | ||| || |||||  | |||||||| || |||||||||    
T  23897994 tactaactactaagtaaaaatgataattttggtgcccctaaaaaaatggttccctgggctgccgcccctcaagcccaccctcagggccacccctg 23898088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 15 - 95
Target Start/End: Original strand, 10976216 - 10976296
Alignment:
Q  15 actaactactaagtaaaaataataattttgatgcccctaaaataatggtgccctagactgtcgtccctcccgtccaccctc 95  Q
    |||||| ||||| ||||| ||||||||||||||||||||||| ||||||||| | ||||| || ||| |||| ||||||||    
T  10976216 actaaccactaaataaaactaataattttgatgcccctaaaaaaatggtgccttggactgccgccccgcccgcccaccctc 10976296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 14 - 64
Target Start/End: Complemental strand, 1240457 - 1240407
Alignment:
Q  14 tactaactactaagtaaaaataataattttgatgcccctaaaataatggtg 64  Q
    ||||||||||||||||||||||||||||||  ||||||||||| |||||||    
T  1240457 tactaactactaagtaaaaataataattttagtgcccctaaaaaaatggtg 1240407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 110
Target Start/End: Original strand, 8246819 - 8246913
Alignment:
Q  14 tactaactactaagtaaaaataataattttgatgcccctaaaataatggtgccctagactgtcgtccctcccgtccaccctctggaccacccctgtc 110  Q
    ||||||||| ||||||||||||||||||||| ||  ||||||| |||||||||||  |||| || |||| ||| |||||| | || |||||||||||    
T  8246819 tactaactattaagtaaaaataataattttggtg--cctaaaaaaatggtgccctgaactgccgccccttccgcccacccgcagggccacccctgtc 8246913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 109
Target Start/End: Complemental strand, 23935218 - 23935123
Alignment:
Q  14 tactaactactaagtaaaaataataattttgatgcccctaaaataatggtgccctagactgtcgtccctcccgtccaccctctggaccacccctgt 109  Q
    |||||||||||||||||||||  |||||||| || |||||||| ||||||||||| | ||| || |||||  | ||||| || || ||||||||||    
T  23935218 tactaactactaagtaaaaatgttaattttggtgaccctaaaaaaatggtgccctgggctgccgcccctcaagcccaccttcagggccacccctgt 23935123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 35405346 - 35405300
Alignment:
Q  21 tactaagtaaaaataataattttgatgcccctaaaataatggtgccct 68  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||    
T  35405346 tactaagtaaaaataataattttggtgcccctaaaa-aatggtgccct 35405300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 106
Target Start/End: Original strand, 45385332 - 45385427
Alignment:
Q  11 taatactaactactaagtaaaaataataattttgatgcccctaaaataatggtgccctagactgtcgtccctcccgtccaccctctggaccacccc 106  Q
    |||||| ||||||||| ||||||||||||||||||| ||||| | | ||||||| ||||| ||| |  | |||||| |||||||| || |||||||    
T  45385332 taatacaaactactaaataaaaataataattttgataccccttataaaatggtgtcctaggctgccacctctcccgcccaccctcagggccacccc 45385427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 47
Target Start/End: Original strand, 35204310 - 35204347
Alignment:
Q  10 ataatactaactactaagtaaaaataataattttgatg 47  Q
    |||||||||| |||||||||||||||||||||||||||    
T  35204310 ataatactaattactaagtaaaaataataattttgatg 35204347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 22667683 - 22667747
Alignment:
Q  19 actactaagtaaaaataataattttgatgcccctaaaataatggtgccctagactgtcgtccctc 83  Q
    |||||||| ||||||||||||||||  ||||||||||  ||||||||||||| ||| || |||||    
T  22667683 actactaaataaaaataataatttttgtgcccctaaataaatggtgccctaggctgccgcccctc 22667747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 40869 - 40916
Alignment:
Q  17 taactactaagtaaaaataataattttgatgcccctaaaataatggtg 64  Q
    ||||||| |||||||||||||||||||| ||||||||| | |||||||    
T  40869 taactacaaagtaaaaataataattttggtgcccctaataaaatggtg 40916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 68
Target Start/End: Original strand, 3265561 - 3265618
Alignment:
Q  11 taatactaactactaagtaaaaataataattttgatgcccctaaaataatggtgccct 68  Q
    |||||||||||| ||||||||||||||||||||| | ||| | | | |||||||||||    
T  3265561 taatactaactattaagtaaaaataataattttggttccctttataaaatggtgccct 3265618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 1153820 - 1153860
Alignment:
Q  11 taatactaactactaagtaaaaataataattttgatgcccc 51  Q
    |||||||||||||||| |||||||||||||| || ||||||    
T  1153820 taatactaactactaaataaaaataataattgtggtgcccc 1153860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 65067 - 65016
Alignment:
Q  14 tactaactactaagtaaaaataataattttgatgcccctaaaataatggtgcc 66  Q
    |||||| ||||||||||| |||||||||||| ||||||||||| |||||||||    
T  65067 tactaattactaagtaaatataataattttg-tgcccctaaaaaaatggtgcc 65016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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