View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19163_low_18 (Length: 374)
Name: NF19163_low_18
Description: NF19163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19163_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 170; Significance: 4e-91; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 86 - 263
Target Start/End: Complemental strand, 34147618 - 34147441
Alignment:
| Q |
86 |
gaagaagtagaagtaccaacctctaggtaccttgtttcttgttccaaccgtttaagttcagcatgtatcctatgtttccctcttgtatctgaagaagttg |
185 |
Q |
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| T |
34147618 |
gaagaagtagaagtaccaacctctaggtaccttgtttcttgttccaaccgtttaagttcagcatgtatcctatgtttccctcttgtatctgaagaagttg |
34147519 |
T |
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| Q |
186 |
aaaaagactgagactgaacaaagtgggtcgtcgggttatcgaattcagacccatccgattgcattttctgaggctaag |
263 |
Q |
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| T |
34147518 |
aaaaagactgagactgaacaaagtgggtcgtcgggttatcggattgagacccatccgattgcattttctgaggctaag |
34147441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 95 - 204
Target Start/End: Complemental strand, 34176979 - 34176873
Alignment:
| Q |
95 |
gaagtaccaacctctaggtaccttgtttcttgttccaaccgtttaagttcagcatgtatcctatgtttccctcttgtatctgaagaagttgaaaaagact |
194 |
Q |
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| T |
34176979 |
gaagtagctacctctaagtaccttgtttcttgttccaaccttttaagctcagcatgtattctatgttttcctcttgtatctgaagaa---gaaagagact |
34176883 |
T |
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| Q |
195 |
gagactgaac |
204 |
Q |
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| T |
34176882 |
gagactgaac |
34176873 |
T |
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