View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19163_low_2 (Length: 636)
Name: NF19163_low_2
Description: NF19163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19163_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 18 - 620
Target Start/End: Original strand, 40172853 - 40173458
Alignment:
| Q |
18 |
atggactacatggagaagatacagaaaaacatcaatgctagcatgcgggcaatgcttattgattggcttgtggaggtaaactatggtgggtgatggactg |
117 |
Q |
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| T |
40172853 |
atggactacatggagaagatacagaaaaagatcaatgctagcatgcgggcaatgcttattgattggcttgtggaggtaaattatggtgggtgacggactg |
40172952 |
T |
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| Q |
118 |
ccggggtgatagatttattccaggggatttgttcttctcaatgtgcnnnnnnncc--agaattatttatataatttattatatgtattgttatatcctga |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
40172953 |
ccggggtgatagatttattccaggggatttgttcttctcaatgtgctacttttttttagaattatttatataatttatca-atgtattgttatatcctga |
40173051 |
T |
|
| Q |
216 |
ttagcgggact--atgtttcattcaaaaacttgttttgacaatgttattttaaatattttgttgtgtcggttattgagggatttaaatactcatgttagg |
313 |
Q |
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|| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
40173052 |
ttggcgggactttatgtttcattcaaaaactcgttttgacaatgttattttaaatattttgttgtgtcggttattgagagatttaaatactcatgttagg |
40173151 |
T |
|
| Q |
314 |
agaggtaaagatgccatagcaatggaagtaggattcattgttatttgtataggattcagtgaacttgcnnnnnnnnnnnnnnnactcatgagggaaaacc |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |
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| T |
40173152 |
agaggtaaagatgccatagcaatggaagtaggattcattgttatttgtataggattcagtgaacttgcttttttctcttttttcctcatgagggaacacc |
40173251 |
T |
|
| Q |
414 |
agaagaacagtatccttcattgagtttcctttcaaatggttttcacttaatttctctctccattgtaggttgctgacgagtacagacttctacctgatac |
513 |
Q |
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||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
40173252 |
agaagaattgtatccttcattaagtttcttttcaaatggttttcacttaatttctctctccattgtaggttgctgacgagtacagactcctacctgatac |
40173351 |
T |
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| Q |
514 |
actatttttggcagttaactaccttgatcgctatctttcaggcaaagcaatgaacacacagcagttacaactgcttggtgttacctgcatgatgattgct |
613 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |
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| T |
40173352 |
actatttttggcagttaactaccttgatcgctatctttcaggcaaagcaatgaacacgcagcagttacaactacttggtgttacctgcatgatgattgct |
40173451 |
T |
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| Q |
614 |
gcgtagg |
620 |
Q |
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| T |
40173452 |
gcgtagg |
40173458 |
T |
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