View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19163_low_20 (Length: 370)
Name: NF19163_low_20
Description: NF19163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19163_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 43841412 - 43841086
Alignment:
| Q |
1 |
tgaaagatttaaatttaaaatgagtgtagtgcagtgtgagagggtgactgacttcccagttctctacatgtattttgcaggtagcacttaatgctgccaa |
100 |
Q |
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| T |
43841412 |
tgaaagatttaaatttaaaatgagtgtagtgcagtgtgagagggtgactgacttcccagttctctacatgtattttgcaggtagcacttaatgctgccaa |
43841313 |
T |
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| Q |
101 |
acacaaagaattgaagttattaaaacgataccacctactactccaaaccaagatgtcagatggtaactacccttccaatctctaaataaagtaatggatt |
200 |
Q |
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| T |
43841312 |
acacaaagaattgaagttattaaaacgataccacctactactccaaaccaagatgtcagatggtaactacccttccaatctctaaataaattaatggatt |
43841213 |
T |
|
| Q |
201 |
tatttaccaacgaagtttgtctaatgaaccc------aaatctgtgatagtgtgacgaatcaatgtttaagttttaaaccgtttaataatatcttgaata |
294 |
Q |
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| T |
43841212 |
tatttaccaacgaagtttgtctaatgaacccagtgttatatttgttatagtgtgacgaatcaatgtttaaattttaaaccgtttaataatatcttgaata |
43841113 |
T |
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| Q |
295 |
aggttatccattttaaaaggtctatga |
321 |
Q |
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|||||||||| |||||||||||||||| |
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| T |
43841112 |
aggttatccactttaaaaggtctatga |
43841086 |
T |
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