View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19163_low_24 (Length: 355)
Name: NF19163_low_24
Description: NF19163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19163_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 324; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 14 - 345
Target Start/End: Complemental strand, 28084361 - 28084030
Alignment:
| Q |
14 |
catttgtcactcaaacaaaactcgagttttcctcggaattcaaattttaatcaataaaattaacaaaattaaagtggaaaaaactgacatattaaattgt |
113 |
Q |
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| T |
28084361 |
catttgtcactcaaacaaaactcgagttttcctcggaattcaaattttaatcaataaaattaacaaaattaaagtggaaaaaactgacatattaaattgt |
28084262 |
T |
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| Q |
114 |
catcagttagaactttttcttaataaacaacaatatcacacaaaaagacaaaacattgtaagtttataataataaataacctatgagaattgcagttggg |
213 |
Q |
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| T |
28084261 |
catcagttagaactttttcttaataaacaacaatatcacacaaaaagacaaaacattgtaagtttataataataaataacctatgagaattgcagttgag |
28084162 |
T |
|
| Q |
214 |
taaggaacaagtgaaaattacaaaaagctaaagaacaagcaacaataatgaattcatcaatcaaaacatccaaacaaacaagagctcttcctttaaatga |
313 |
Q |
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| T |
28084161 |
taaggaacaagtgaaaattacaaaaagctaaagaacaagcaacaataatgaattcatcaatcaaaacatccaaacaaacaagagctcttcctttaaatga |
28084062 |
T |
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| Q |
314 |
actccattggtcaaaatattagtcggcctttg |
345 |
Q |
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| T |
28084061 |
actccattggtcaaaatattagtcggtctttg |
28084030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 50 - 185
Target Start/End: Complemental strand, 28054106 - 28053971
Alignment:
| Q |
50 |
aattcaaattttaatcaataaaattaacaaaattaaagtggaaaaaactgacatattaaattgtcatcagttagaactttttcttaataaacaacaatat |
149 |
Q |
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| T |
28054106 |
aattcaaattttaattaataaaaataacaaaattaaagggggaaaaactgatatattaaattggcatcagttcgaactatttttaaataaacaacaatat |
28054007 |
T |
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| Q |
150 |
cacacaaaaagacaaaacattgtaagtttataataa |
185 |
Q |
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| T |
28054006 |
catacaaaaagacaaaacattgtaagtttataataa |
28053971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 38 - 146
Target Start/End: Original strand, 27928855 - 27928961
Alignment:
| Q |
38 |
agttttcctcggaattcaaattttaatcaataaaattaacaaaattaaagtggaaaaaactgacatattaaattgtcatcagttagaactttttcttaat |
137 |
Q |
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|||||||||| |||||||| ||| || | ||||||||||||||||||| | |||||||| ||||||| |||||| ||||||||||| ||||| ||||| |
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| T |
27928855 |
agttttcctccaaattcaaaatttgattattaaaattaacaaaattaaatggtaaaaaactaacatatt-aattgtgatcagttagaagttttt-ttaat |
27928952 |
T |
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| Q |
138 |
aaacaacaa |
146 |
Q |
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||||||||| |
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| T |
27928953 |
aaacaacaa |
27928961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 133 - 181
Target Start/End: Complemental strand, 1433685 - 1433636
Alignment:
| Q |
133 |
ttaataaacaacaatatcacacaaaaagacaaaacattg-taagtttata |
181 |
Q |
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| T |
1433685 |
ttaataaacaacaatatcacacaaaaagacaaaacattgttaagtttata |
1433636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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