View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19163_low_25 (Length: 341)
Name: NF19163_low_25
Description: NF19163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19163_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 35171759 - 35171438
Alignment:
| Q |
1 |
aaaatggaaaggaaaatgtcaagcaggacaagatttcaacacttctatgtgtaacttgaaattaattggagctagatatttcaacaaaggtgtgattgca |
100 |
Q |
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| T |
35171759 |
aaaatggaaaggaaaatgtcaagcaggacaagatttcaacacttctatgtgtaacttgaaattaattggagctagatatttcaacaaaggtgtgattgca |
35171660 |
T |
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| Q |
101 |
tcaaaaccaaatgtcaaaatcagtatgaactcagctagagacacacaaggacatggtagtcacacatcatcaacggcagccggaaactatgtcaaagatg |
200 |
Q |
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| T |
35171659 |
tcaaaaccaaatgtcaaaatcagtatgaactcagctagagacacacaaggacatggtagtcacacatcatcaacggcagccggaaactatgtcaaagatg |
35171560 |
T |
|
| Q |
201 |
cttctttctttggttatgcaaaaggtgtagctagaggtattgcaccaaaagctagaattgcaatgtataaagtactttgggacgaaggtcgtctagcttc |
300 |
Q |
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| T |
35171559 |
catctttctttggttatgcaaaaggtgtagctagaggtattgcaccaaaagctagaattgcaatgtataaagtactttgggacgaaggtcgtctagcttc |
35171460 |
T |
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| Q |
301 |
tgatgttcttgcaggaatggat |
322 |
Q |
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| T |
35171459 |
tgatgttcttgcaggaatggat |
35171438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 2 - 174
Target Start/End: Original strand, 30098737 - 30098909
Alignment:
| Q |
2 |
aaatggaaaggaaaatgtcaagcaggacaagatttcaacacttctatgtgtaacttgaaattaattggagctagatatttcaacaaaggtgtgattgcat |
101 |
Q |
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| T |
30098737 |
aaatggaaaggaacatgtgaaactggccaagaattcaatacctcaatgtgtaacttcaaattgattggagctagatatttcaacaaaggtgtgattgctt |
30098836 |
T |
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| Q |
102 |
caaaaccaaatgtcaaaatcagtatgaactcagctagagacacacaaggacatggtagtcacacatcatcaac |
174 |
Q |
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| T |
30098837 |
caaatccaaatgttacaatcagcatgaactcagctagagacactatagggcatggaactcacacatcatcaac |
30098909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 47 - 143
Target Start/End: Complemental strand, 30092084 - 30091988
Alignment:
| Q |
47 |
atgtgtaacttgaaattaattggagctagatatttcaacaaaggtgtgattgcatcaaaaccaaatgtcaaaatcagtatgaactcagctagagaca |
143 |
Q |
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| T |
30092084 |
atgtgcaacttcaaactgattggagctagatctttcaacaaaggtgtgattgcttcaaatccaaatgttagaatcaggatgaactcagctagagaca |
30091988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 200 - 307
Target Start/End: Original strand, 30099073 - 30099180
Alignment:
| Q |
200 |
gcttctttctttggttatgcaaaaggtgtagctagaggtattgcaccaaaagctagaattgcaatgtataaagtactttgggacgaaggtcgtctagctt |
299 |
Q |
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||||||| ||||||||||| ||||| |||| ||||| ||||||||||||||||| ||||| ||||| ||||| ||||||| || |||||| | || | |
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| T |
30099073 |
gcttcttattttggttatgccaaaggaatagcaagaggcattgcaccaaaagctaggattgctatgtacaaagtcatttgggaagagggtcgtttcgcct |
30099172 |
T |
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| Q |
300 |
ctgatgtt |
307 |
Q |
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| T |
30099173 |
ctgatgtt |
30099180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 185 - 321
Target Start/End: Complemental strand, 30091855 - 30091719
Alignment:
| Q |
185 |
aactatgtcaaagatgcttctttctttggttatgcaaaaggtgtagctagaggtattgcaccaaaagctagaattgcaatgtataaagtactttgggacg |
284 |
Q |
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| T |
30091855 |
aactatgtcaatggaacttcttattttggttatgctaaaggagtagcaagaggcattgcaccaagagctaggcttgctatgtacaaagtcatttgggaag |
30091756 |
T |
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| Q |
285 |
aaggtcgtctagcttctgatgttcttgcaggaatgga |
321 |
Q |
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| T |
30091755 |
agggtcttttggcttctgatgttttagctggaatgga |
30091719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 185 - 282
Target Start/End: Complemental strand, 30087875 - 30087778
Alignment:
| Q |
185 |
aactatgtcaaagatgcttctttctttggttatgcaaaaggtgtagctagaggtattgcaccaaaagctagaattgcaatgtataaagtactttggga |
282 |
Q |
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| T |
30087875 |
aactatgtcaacggagcttcttattttggctatgctaaaggagtagcaagaggcattgcaccaaaagctaagattgctatgtacaaagtcatttggga |
30087778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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