View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19163_low_3 (Length: 590)
Name: NF19163_low_3
Description: NF19163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19163_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 163 - 574
Target Start/End: Complemental strand, 33310134 - 33309721
Alignment:
| Q |
163 |
cgttatttatagtgtcccattataacggagaaacaccatgatgttaacgnnnnnnngcaaatcgcttaattattgtaataaataaataattaagataacg |
262 |
Q |
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| T |
33310134 |
cgttatttatagtgtcccattataacggagaaacaccatgatgttaacgtttttttgcaaatcgcttaattattgtaataaataaataattaagataacg |
33310035 |
T |
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| Q |
263 |
attgtgaaaaatacacgagaatttgtacgatatatcgtttgcgagatattgaattttgatagagaagatgggtttattcgtataatcgtattcgaggttc |
362 |
Q |
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|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33310034 |
attgtgaaaaatacacgagaatttgtacgatatatcgtgtacgagatattgaattttgatagagaagatgggtttattcgtataatcgtattcgaggttc |
33309935 |
T |
|
| Q |
363 |
cttcctctttgtcttgtggttaggagaaatcgaatattcgatattaaaaatacgataaattgaaaatttaagggttcacgagactttgtaatatcaccgt |
462 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
33309934 |
cttcctctttgtcttgtggttaggagaaatcgaatattcgatattaaaaatacgataaattgaaaatttaagggttcacgagactttgtactatcaccgt |
33309835 |
T |
|
| Q |
463 |
acacgtgtgttttgatgacgaatgaagactaagtcgatggcagattttaaccgtggaaaataagtgtaa--ttttannnnnnnngactcaattagtttag |
560 |
Q |
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|||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||| ||||| |||||||||||||||| |
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| T |
33309834 |
acacgtgtgttttgatgacgaatgaaaactaagtcgatggcggattttaaccgtggaaaataagggtaattttttattttttttgactcaattagtttag |
33309735 |
T |
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| Q |
561 |
ctattggtaatttg |
574 |
Q |
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| T |
33309734 |
ctattggtaatttg |
33309721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 33310296 - 33310197
Alignment:
| Q |
1 |
tgcgacaatttgataaagattgtgatgagattttggttaagcttaagagacgttgagttagggttttcttaaacgccattgatgaagaattgaaggttct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33310296 |
tgcgacaatttgataaagattgtgatgagattttggttaagcttaagagacgttgagttagggttttcttaaacgccattgatgaagaattgaaggttct |
33310197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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