View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19163_low_33 (Length: 302)
Name: NF19163_low_33
Description: NF19163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19163_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 35523349 - 35523633
Alignment:
| Q |
1 |
ttgtatcgttggagtaccggctgatgaagtcaataaggagaccaaagtaaataaagataattggtttccaatttgggatgaagagtttgattttcctttg |
100 |
Q |
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| T |
35523349 |
ttgtattgttggagtaccggctgatgaagtcaataagaagaccaaagtaaataaagataattggtttccaatttgggatgaagagtttgattttcctttg |
35523448 |
T |
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| Q |
101 |
agcgttccagagcttgctttgcttaggattgaagttagagagcatgataagcatgaaaaggatgattttggtggacaaacatgtttgccagtttctgagc |
200 |
Q |
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| T |
35523449 |
agcgttccagagcttgctttgcttaggattgaagttagagagcatgataagcatgaaaaggatgattttggtggacaaacatgtttgccagtttctgagc |
35523548 |
T |
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| Q |
201 |
tgaaatctggattcagagcagttcctttatatgatcaaaagggtgagaaattaaaatctgtaaagcttttaatgcggtttcagtt |
285 |
Q |
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| T |
35523549 |
tgaaatctggattcagagcagttcctttatatgatcaaaagggtgagaaattaaaatctgtaaagcttttaatgcggtttcagtt |
35523633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 59 - 288
Target Start/End: Original strand, 35510657 - 35510886
Alignment:
| Q |
59 |
aattggtttccaatttgggatgaagagtttgattttcctttgagcgttccagagcttgctttgcttaggattgaagttagagagcatgat-aagcatgaa |
157 |
Q |
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| T |
35510657 |
aattggtttcctgtgtggaatgaagaatttgaattccctttgactgttccagagcttgctttacttcagatacaagtaagagacaaagatcaaggaggaa |
35510756 |
T |
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| Q |
158 |
aaggatgattttggtggacaaacatgtttgccagtttctgagctgaaatctggattcagagcagttcctttatatgatcaaaagggtgagaaattaaaat |
257 |
Q |
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| T |
35510757 |
aag-atgactttgctggacaaacatgtttgccagtttcagagataaaacttggatttagatcaatccctttatataatgaaaagggtgaacaatttaaat |
35510855 |
T |
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| Q |
258 |
ctgtaaagcttttaatgcggtttcagtttga |
288 |
Q |
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| T |
35510856 |
ctgttaagttgttaatgaggtttcaatttga |
35510886 |
T |
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