View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19163_low_34 (Length: 289)
Name: NF19163_low_34
Description: NF19163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19163_low_34 |
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Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 30286719 - 30286443
Alignment:
| Q |
1 |
ctgctcttgctggttttcatttctttgacccacaagttcaaattctccttttccttcttcaactgctactatcactgtggcccttgaattgaagtgtggc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30286719 |
ctgctcttgctggttttcatttctttgacccacaagttcaaattctccttttccttcttcaactgctactatcactgtggcccttgaattgaagtgtggc |
30286620 |
T |
|
| Q |
101 |
aacaaaagtgatccctaaaattaaatttgaacaaataaattcataaatatttttaacgacagtaattagtgtcacttaaactaataataatcgtttaaga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
30286619 |
aacaaaagtgatccctaaaattaaatttgaacaaataaattcataaatatttttaacgatagtaattagtgtcacttaaactaataataatcgtttaaga |
30286520 |
T |
|
| Q |
201 |
taatttttgccctacctccctaatctccgcataattgaccaatatatccaagtctttaagctgtggatttttctctg |
277 |
Q |
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||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30286519 |
taattttcgctctacctccctaatctccgcataattgaccaatatatccaagtctttaagctgtggatttttctctg |
30286443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 30315300 - 30315026
Alignment:
| Q |
1 |
ctgctcttgctggttttcatttctttgacccacaagttcaaattctccttttccttcttcaactgctactatcactgtggcccttgaattgaagtgtggc |
100 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30315300 |
ctgctcttgctggttttcatttctttgccccacaagttcaaattctccttttccttcttcaactgctactatcactgtggcccttgaattgaagtgtggc |
30315201 |
T |
|
| Q |
101 |
aacaaaagtgatccctaaaattaaatttgaacaaataaattcataaatatttttaacgacagtaattagtgtcacttaaactaataataatcgtttaaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| || |||||||| || ||||||| |
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| T |
30315200 |
aacaaaagtgatccctaaaattaaatttgaacaaataaattcgtaaatatttttaacgatagtaattagtgtcactttaattaataatagtcttttaaga |
30315101 |
T |
|
| Q |
201 |
taatttttgccctacctccctaatctccgcataattgaccaatatatccaagtctttaagctgtggatttttctc |
275 |
Q |
| |
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||||||| || ||||||||||||||||||||||||| || |||||||||||||||| ||| |||||||||||||| |
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| T |
30315100 |
taattttggctctacctccctaatctccgcataattcactaatatatccaagtcttgaagttgtggatttttctc |
30315026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 30304387 - 30304113
Alignment:
| Q |
1 |
ctgctcttgctggttttcatttctttgacccacaagttcaaattctccttttccttcttcaactgctactatcactgtggcccttgaattgaagtgtggc |
100 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||| |
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| T |
30304387 |
ctgctcttgctggttttcatttctttgtcccacaagttcaaattctccttttccttcatcaactactactatcaccgtggcccttgaattgaagtgtggc |
30304288 |
T |
|
| Q |
101 |
aacaaaagtgatccctaaaattaaatttgaacaaataaattcataaatatttttaacgacagtaattagtgtcacttaaactaataataatcgtttaaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||| || |||||||| || ||||||| |
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| T |
30304287 |
aacaaaagtgatccctaaaattaaatttgaacaactaaattcattaatatttttaacgatagtaattagtgtcactttaattaataatagtcttttaaga |
30304188 |
T |
|
| Q |
201 |
taatttttgccctacctccctaatctccgcataattgaccaatatatccaagtctttaagctgtggatttttctc |
275 |
Q |
| |
|
||||||| || ||||||||||||||||||||| | |||| |||||||||||||||| ||| ||| |||||||||| |
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| T |
30304187 |
taattttcgctctacctccctaatctccgcattagtgactaatatatccaagtcttgaagttgttgatttttctc |
30304113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 30291753 - 30291486
Alignment:
| Q |
1 |
ctgctcttgctggttttcatttctttgacccacaagttcaaattctccttttccttcttcaactgctactatcactgtggcccttgaattgaagtgtggc |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30291753 |
ctgctcttgctggttttcatttctttgtcccacaagttcaaattctccttttccttcttcaactgctactatcactgtggcccttgaattgaagtgtggc |
30291654 |
T |
|
| Q |
101 |
aacaaaagtgatccctaaaattaaatttgaacaaataaattcataaatatttttaacgacagtaattagtgtcacttaaactaataataatcgtttaaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| || |||||||| || ||||||| |
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| T |
30291653 |
aacaaaagtgatccctaaaattaaatttgaacaaataaattcgtaaatatttttaac-------attagtgtcactttaattaataatagtcttttaaga |
30291561 |
T |
|
| Q |
201 |
taatttttgccctacctccctaatctccgcataattgaccaatatatccaagtctttaagctgtggatttttctc |
275 |
Q |
| |
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| ||||||| |||||||||||||||||||||||| || |||||||||||||||| ||| |||||||||||||| |
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| T |
30291560 |
ttttttttgctttacctccctaatctccgcataattcactaatatatccaagtcttgaagttgtggatttttctc |
30291486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 30299180 - 30298907
Alignment:
| Q |
1 |
ctgctcttgctggttttcatttctttgacccacaagttcaaattctccttttccttcttcaactgctactatcactgtggcccttgaattgaagtgtggc |
100 |
Q |
| |
|
||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||| |
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| T |
30299180 |
ctgctcttgttggttctcatttctttgtcccacaagttcaaattctccttttccttcatcaactactactatcactgtggcccttgaattgaaatgtggc |
30299081 |
T |
|
| Q |
101 |
aacaaaagtgatccctaaaattaaatttgaacaaataaattcataaatatttttaacgacagtaattagtgtcacttaaactaataataatcgtttaaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||||| |||||||| ||| ||||||||||||||||||| || |||||||||| ||||||| |
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| T |
30299080 |
aacaaaagtgatccctaaaattaaattt-aacaagaaaattcattaatattttgaacaacagtaattagtgtcactttaattaataataattttttaaga |
30298982 |
T |
|
| Q |
201 |
taatttttgccctacctccctaatctccgcataattgaccaatatatccaagtctttaagctgtggatttttctc |
275 |
Q |
| |
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| |||||||| ||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||| |
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| T |
30298981 |
tcatttttgctctacctccctaatctccgcataattaactaatatatccaagtctttaagttgtggatttttctc |
30298907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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