View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19163_low_39 (Length: 255)
Name: NF19163_low_39
Description: NF19163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19163_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 50726430 - 50726212
Alignment:
| Q |
18 |
ccctccactcacatattggcactataaaagtagtcaatgcttttacattggtcttgagtcaaattaaagaaaaccaaatttattcattttattttagcta |
117 |
Q |
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| T |
50726430 |
ccctccactcacatattggcactataaaagtagtcaatgcttttacattggtcttgagtcaaattaaagaaaaccaaatttattcatttta-----gcta |
50726336 |
T |
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| Q |
118 |
gagaaatgaatgtctttctagtccagatcctatgtttcattcttttaactactagtactaccacttcattgttcattaaagcatctgaaataaatgttga |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
50726335 |
gagaaatgaatgtctttctagtccagatcctatgtttcattcttttaactactagtactaccatttcattgttcattaaagcatctgaaataaatgttga |
50726236 |
T |
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| Q |
218 |
aagttatgaaactgatagaataat |
241 |
Q |
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|||||||||||||||||||||||| |
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| T |
50726235 |
aagttatgaaactgatagaataat |
50726212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 50734444 - 50734226
Alignment:
| Q |
18 |
ccctccactcacatattggcactataaaagtagtcaatgcttttacattggtcttgagtcaaattaaagaaaaccaaatttattcattttattttagcta |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
50734444 |
ccctccactcacatattggcactataaaagtagtcaatgcttttacattggtcttgagtcaaattaaagaaaaccaaatttattcatttta-----gcta |
50734350 |
T |
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| Q |
118 |
gagaaatgaatgtctttctagtccagatcctatgtttcattcttttaactactagtactaccacttcattgttcattaaagcatctgaaataaatgttga |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
50734349 |
gagaaatgaatgtctttctagtccagatcctatgtttcattcttttaactactagtactaccatttcattgttcattaaagcatctgaaataaatgttga |
50734250 |
T |
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| Q |
218 |
aagttatgaaactgatagaataat |
241 |
Q |
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|||||||||||||||||||||||| |
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| T |
50734249 |
aagttatgaaactgatagaataat |
50734226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 145 - 241
Target Start/End: Complemental strand, 50737415 - 50737322
Alignment:
| Q |
145 |
tcctatgtttcattcttttaactactagtactaccacttcattgttcattaaagcatctgaaataaatgttgaaagttatgaaactgatagaataat |
241 |
Q |
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||||||||||| |||||||||||| || ||| || |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |
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| T |
50737415 |
tcctatgtttctttcttttaactattaccacttcc---tcattgttcattaaagcatctgaaataaatgttgaaagctatgaatctgatagaataat |
50737322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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