View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19163_low_41 (Length: 250)

Name: NF19163_low_41
Description: NF19163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19163_low_41
NF19163_low_41
[»] chr8 (4 HSPs)
chr8 (1-245)||(16464187-16464431)
chr8 (79-214)||(16494174-16494309)
chr8 (2-38)||(24294585-24294621)
chr8 (9-38)||(5228237-5228266)
[»] chr3 (4 HSPs)
chr3 (4-38)||(42252186-42252220)
chr3 (5-38)||(9276948-9276981)
chr3 (1-38)||(20882079-20882116)
chr3 (10-38)||(26643225-26643253)
[»] chr7 (1 HSPs)
chr7 (1-38)||(5363411-5363448)
[»] chr1 (1 HSPs)
chr1 (4-38)||(303754-303788)
[»] scaffold0091 (1 HSPs)
scaffold0091 (9-38)||(7654-7683)
[»] chr5 (1 HSPs)
chr5 (9-38)||(33267922-33267951)
[»] chr2 (1 HSPs)
chr2 (10-39)||(19173878-19173907)
[»] scaffold0393 (1 HSPs)
scaffold0393 (4-36)||(12174-12206)


Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 16464187 - 16464431
Alignment:
Q  1 tcagacatgccttcaatctgaagtgtcggtgctacataatagaggattgatacttatgttgttttgttctttcattttttcagctacaacgtacaataac 100  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16464187 tcagacatgccatcagtctgaagtgtcggtgctacataatagaggattgatacttatgttgttttgttctttcattttttcagctacaacgtacaataac 16464286  T
Q  101 atgaggaagccagtgacaaatagctcaaactacatttccaacccacatgaaatgggagttggggaaattaatccactcaaagctctcaaccctggtttag 200  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16464287 atgaggaagccagtgacaaatagctcgaactacatttccaacccacatgaaatgggagttggggaaattaatccactcaaagctctcaaccctggtttag 16464386  T
Q  201 tctttgaaacaaatgtgaaagactacattaacttcctatgctact 245  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  16464387 tctttgaaacaaatgtgaaagactacattaacttcctatgttact 16464431  T

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Target: chr8; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 79 - 214
Target Start/End: Original strand, 16494174 - 16494309
Alignment:
Q  79 ttcagctacaacgtacaataacatgaggaagccagtgacaaatagctcaaactacatttccaacccacatgaaatgggagttggggaaattaatccactc 178  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||||||| ||| || ||||||||||||||||||||||||| |||||||||||||||    
T  16494174 ttcagctacaacctacaataacatgaggaagccagtgaccaatagctcaaattactttgccaacccacatgaaatgggagttggagaaattaatccactc 16494273  T
Q  179 aaagctctcaaccctggtttagtctttgaaacaaat 214  Q
    ||||||||||||||||| ||||||||||||||||||    
T  16494274 aaagctctcaaccctggattagtctttgaaacaaat 16494309  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 24294585 - 24294621
Alignment:
Q  2 cagacatgccttcaatctgaagtgtcggtgctacata 38  Q
    |||||||||||||||| ||||||||||||||||||||    
T  24294585 cagacatgccttcaatatgaagtgtcggtgctacata 24294621  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 38
Target Start/End: Original strand, 5228237 - 5228266
Alignment:
Q  9 gccttcaatctgaagtgtcggtgctacata 38  Q
    ||||||||||||||||||||||||||||||    
T  5228237 gccttcaatctgaagtgtcggtgctacata 5228266  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 38
Target Start/End: Complemental strand, 42252220 - 42252186
Alignment:
Q  4 gacatgccttcaatctgaagtgtcggtgctacata 38  Q
    |||||||||||||||||||||||||||||||||||    
T  42252220 gacatgccttcaatctgaagtgtcggtgctacata 42252186  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 9276948 - 9276981
Alignment:
Q  5 acatgccttcaatctgaagtgtcggtgctacata 38  Q
    ||||||||||||||||||||||| ||||||||||    
T  9276948 acatgccttcaatctgaagtgtcagtgctacata 9276981  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 20882079 - 20882116
Alignment:
Q  1 tcagacatgccttcaatctgaagtgtcggtgctacata 38  Q
    |||||||||||||||||||||||| ||||| |||||||    
T  20882079 tcagacatgccttcaatctgaagtatcggtcctacata 20882116  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 38
Target Start/End: Complemental strand, 26643253 - 26643225
Alignment:
Q  10 ccttcaatctgaagtgtcggtgctacata 38  Q
    |||||||||||||||||||||||||||||    
T  26643253 ccttcaatctgaagtgtcggtgctacata 26643225  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 5363411 - 5363448
Alignment:
Q  1 tcagacatgccttcaatctgaagtgtcggtgctacata 38  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  5363411 tcagacatgccttcaatttgaagtgtcggtgctacata 5363448  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 38
Target Start/End: Original strand, 303754 - 303788
Alignment:
Q  4 gacatgccttcaatctgaagtgtcggtgctacata 38  Q
    ||||||||||||||||||||||| |||||||||||    
T  303754 gacatgccttcaatctgaagtgttggtgctacata 303788  T

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Target: scaffold0091 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 38
Target Start/End: Original strand, 7654 - 7683
Alignment:
Q  9 gccttcaatctgaagtgtcggtgctacata 38  Q
    ||||||||||||||||||||||||||||||    
T  7654 gccttcaatctgaagtgtcggtgctacata 7683  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 38
Target Start/End: Original strand, 33267922 - 33267951
Alignment:
Q  9 gccttcaatctgaagtgtcggtgctacata 38  Q
    ||||||||||||||||||||||||||||||    
T  33267922 gccttcaatctgaagtgtcggtgctacata 33267951  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 39
Target Start/End: Original strand, 19173878 - 19173907
Alignment:
Q  10 ccttcaatctgaagtgtcggtgctacataa 39  Q
    ||||||||||||||||||||||||||||||    
T  19173878 ccttcaatctgaagtgtcggtgctacataa 19173907  T

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Target: scaffold0393 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 12206 - 12174
Alignment:
Q  4 gacatgccttcaatctgaagtgtcggtgctaca 36  Q
    |||||||||||||||| ||||||||||||||||    
T  12206 gacatgccttcaatctaaagtgtcggtgctaca 12174  T

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