View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19163_low_44 (Length: 247)
Name: NF19163_low_44
Description: NF19163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19163_low_44 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 13 - 247
Target Start/End: Complemental strand, 40023601 - 40023367
Alignment:
| Q |
13 |
gaaaaggatcatgagagagaaagacagagatggccaccctagggcaactgcatcggcattctccttcagtaacatgtaggttttacgggcggggaagggt |
112 |
Q |
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| T |
40023601 |
gaaaaggatcatgagagagaaagaaagagatggccaccctagggcaactgcatcggcattctccttcagtaacatgtaggttttacgggcggggaagggt |
40023502 |
T |
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| Q |
113 |
tctagttagggtgacataaataggggtgattggtctgaggtgagcaggcaacgacgaaaagcgatcagtccaggaagcacatgacatgacgagtttggta |
212 |
Q |
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||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
40023501 |
tctagttagagtgacataaatatgggtgattggtctgaggtgagcaggcaacgacaaaaagcgatcagtccaagaagcacatgacatgacgagtttggta |
40023402 |
T |
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| Q |
213 |
ggttcaagcgacaagaagggtatgacataggctac |
247 |
Q |
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| T |
40023401 |
ggttcaagcgacaagaaggttatgacataggctac |
40023367 |
T |
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