View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19163_low_46 (Length: 242)
Name: NF19163_low_46
Description: NF19163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19163_low_46 |
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Alignment Details
Target: chr5 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 13 - 186
Target Start/End: Complemental strand, 9308489 - 9308315
Alignment:
| Q |
13 |
aaaatcaagttacaccatatgggtattttgggaattgtaaatttttaaaataaaagattcctgggaactaaaaatattatccaaacac-nnnnnnnnnaa |
111 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |
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| T |
9308489 |
aaaatcaagttacaccatatgggtattttgggaattgtaaatttttaaaataaaagattcctgggaactaaaaatactatccaaacacttttttttttaa |
9308390 |
T |
|
| Q |
112 |
aatattccttcgaaagttatgcccggaaaagtcattcctaggattaaattttgataccatgaaacaaacgcctcc |
186 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9308389 |
aatattccttcgaaagttatgcccggaaaagtcattcctaggattaaattttgataccatgaaacaaacgcctcc |
9308315 |
T |
|
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Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 13 - 189
Target Start/End: Complemental strand, 28131117 - 28130940
Alignment:
| Q |
13 |
aaaatcaagttacaccatatgggtattttgggaattgtaaatttttaaaataaaagattcctgggaactaaaaatattatccaaacacnnnnnnnnnaaa |
112 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
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| T |
28131117 |
aaaatcaagttacatcatatgggtattttgggaattgtaaatttttaaaataaaagattcctgggaactaaaaatactatccaaacactttttgtttaaa |
28131018 |
T |
|
| Q |
113 |
a-tattccttcgaaagttatgcccggaaaagtcattcctaggattaaattttgataccatgaaacaaacgcctcctta |
189 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28131017 |
aatattccttcgaaagttatgcccggaaaagtcattcctaggattaaattttgataccatgaaacaaacgcctcctta |
28130940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 13 - 187
Target Start/End: Original strand, 35339159 - 35339334
Alignment:
| Q |
13 |
aaaatcaagttacaccatatgggtattttgggaattgtaaatttttaaaataaaagattcctgggaactaaaaatattatccaaacac-nnnnnnnnnaa |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |
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| T |
35339159 |
aaaatcaagttacaccatatgggtattttgggaattgtaaatttttaaaataaaagattcctgggaactaaaaatactatccaaacactttttgtttaaa |
35339258 |
T |
|
| Q |
112 |
aatattccttcgaaagttatgcccggaaaagtcattcctaggattaaattttgataccatgaaacaaacgcctcct |
187 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
35339259 |
aatattccttcgaaagttatgcccggaaaagtcattcctaagattaaattttgataccatgaaacaaacgcctcct |
35339334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 225
Target Start/End: Original strand, 26240144 - 26240179
Alignment:
| Q |
190 |
aagtttttaaatatcattgttgtatatcaaaccttt |
225 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
26240144 |
aagtttttaaatatcattgttgtatatcaaaccttt |
26240179 |
T |
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