View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19163_low_5 (Length: 563)

Name: NF19163_low_5
Description: NF19163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19163_low_5
NF19163_low_5
[»] chr2 (2 HSPs)
chr2 (21-209)||(21189747-21189935)
chr2 (439-551)||(6852535-6852647)
[»] chr1 (4 HSPs)
chr1 (21-209)||(30747296-30747484)
chr1 (21-209)||(30768747-30768935)
chr1 (35-67)||(30747123-30747155)
chr1 (35-67)||(30768574-30768606)
[»] chr3 (2 HSPs)
chr3 (53-209)||(36466825-36466981)
chr3 (245-367)||(36466995-36467117)
[»] scaffold0425 (2 HSPs)
scaffold0425 (434-551)||(4398-4515)
scaffold0425 (366-395)||(3825-3854)
[»] chr7 (2 HSPs)
chr7 (436-543)||(325520-325627)
chr7 (395-491)||(34853249-34853346)
[»] chr5 (2 HSPs)
chr5 (21-205)||(40568067-40568255)
chr5 (245-366)||(41467083-41467203)
[»] chr4 (1 HSPs)
chr4 (395-491)||(31911575-31911672)


Alignment Details
Target: chr2 (Bit Score: 149; Significance: 2e-78; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 21 - 209
Target Start/End: Complemental strand, 21189935 - 21189747
Alignment:
Q  21 aaaacatatatcagttacaagggtcaaaagataagacaatatatcagagtaaattagactcaatttagaattcactgctgcaaaaatgatttttctcttg 120  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  21189935 aaaacatatatcagttacaagggtcaagagataagacaatatatcatagtaaattagactcaattcagaattcactgctgcaaaaatgatttttctcttg 21189836  T
Q  121 aagatttgatataattcatgtcaaagtaaattttgcgcatctagtcattaacatatatcagaaatgttattcttaataacatgcatttt 209  Q
    |||| ||||||||  ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||| ||||||    
T  21189835 aagacttgatatatatcatgtcaaagtaaattttgcacatctagtcattaacatatctcagaaatgttattcttaatagcatacatttt 21189747  T

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Target: chr2; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 439 - 551
Target Start/End: Complemental strand, 6852647 - 6852535
Alignment:
Q  439 ttttattaattttgtttgttttttcaaaaggaaaaagaatgcaatatctaataatcttaatatatttcttttgattaatatcatttccttcttctctctt 538  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6852647 ttttattaattttgtttgttttttcaaaagggaaaagaatgcaatatctaataatcttaatatatttcttttgattaatatcatttccttcttctctctt 6852548  T
Q  539 ttgatcattcatc 551  Q
    |||||||||||||    
T  6852547 ttgatcattcatc 6852535  T

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Target: chr1 (Bit Score: 145; Significance: 5e-76; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 21 - 209
Target Start/End: Complemental strand, 30747484 - 30747296
Alignment:
Q  21 aaaacatatatcagttacaagggtcaaaagataagacaatatatcagagtaaattagactcaatttagaattcactgctgcaaaaatgatttttctcttg 120  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  30747484 aaaatatatatcagttacaagggtcaagagataagacaatatatcagagtaaattagactcaattcagaatttactgctgcaaaaatgatttttctcttg 30747385  T
Q  121 aagatttgatataattcatgtcaaagtaaattttgcgcatctagtcattaacatatatcagaaatgttattcttaataacatgcatttt 209  Q
    |||| | ||||||  |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  30747384 aagactcgatatatgtcatgttaaagtaaattttgcgcatctagttattaacatatatcagaaatgttattcttgataacatgcatttt 30747296  T

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Target: chr1; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 21 - 209
Target Start/End: Complemental strand, 30768935 - 30768747
Alignment:
Q  21 aaaacatatatcagttacaagggtcaaaagataagacaatatatcagagtaaattagactcaatttagaattcactgctgcaaaaatgatttttctcttg 120  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  30768935 aaaatatatatcagttacaagggtcaagagataagacaatatatcagagtaaattagactcaattcagaatttactgctgcaaaaatgatttttctcttg 30768836  T
Q  121 aagatttgatataattcatgtcaaagtaaattttgcgcatctagtcattaacatatatcagaaatgttattcttaataacatgcatttt 209  Q
    |||| | ||||||  |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  30768835 aagactcgatatatgtcatgttaaagtaaattttgcgcatctagttattaacatatatcagaaatgttattcttgataacatgcatttt 30768747  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 35 - 67
Target Start/End: Original strand, 30747123 - 30747155
Alignment:
Q  35 ttacaagggtcaaaagataagacaatatatcag 67  Q
    ||||||||||||| |||||||||||||||||||    
T  30747123 ttacaagggtcaagagataagacaatatatcag 30747155  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 35 - 67
Target Start/End: Original strand, 30768574 - 30768606
Alignment:
Q  35 ttacaagggtcaaaagataagacaatatatcag 67  Q
    ||||||||||||| |||||||||||||||||||    
T  30768574 ttacaagggtcaagagataagacaatatatcag 30768606  T

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Target: chr3 (Bit Score: 137; Significance: 3e-71; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 53 - 209
Target Start/End: Original strand, 36466825 - 36466981
Alignment:
Q  53 aagacaatatatcagagtaaattagactcaatttagaattcactgctgcaaaaatgatttttctcttgaagatttgatataattcatgtcaaagtaaatt 152  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||  |||||||||||||||||    
T  36466825 aagacaatatatcagagtaaattagactcaattcagaattcactgctgcaaaaatgatttttctcttgaagactcgatatatgtcatgtcaaagtaaatt 36466924  T
Q  153 ttgcgcatctagtcattaacatatatcagaaatgttattcttaataacatgcatttt 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36466925 ttgcgcatctagtcattaacatatatcagaaatgttattcttaataacatgcatttt 36466981  T

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Target: chr3; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 245 - 367
Target Start/End: Original strand, 36466995 - 36467117
Alignment:
Q  245 tgatcaaacaattataatagatagcaggtggattttttgttaaataaagtaggcctaaatacaaatgtaccgtggcccccatatccataagatacaatct 344  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  36466995 tgatcaaacaattataatagatagcaggtggattttttgttaaataaagtaggcctaactacaaatgtaccatggcccccatatccataagatacaatct 36467094  T
Q  345 aacatttgtatatactttcaaag 367  Q
    |||||||||||||||||||||||    
T  36467095 aacatttgtatatactttcaaag 36467117  T

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Target: scaffold0425 (Bit Score: 114; Significance: 1e-57; HSPs: 2)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 434 - 551
Target Start/End: Complemental strand, 4515 - 4398
Alignment:
Q  434 acaggttttattaattttgtttgttttttcaaaaggaaaaagaatgcaatatctaataatcttaatatatttcttttgattaatatcatttccttcttct 533  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4515 acaggttttattaattttgtttgttttttcaaaaggaaaaagaatgcactatctaataatcttaatatatttcttttgattaatatcatttccttcttct 4416  T
Q  534 ctcttttgatcattcatc 551  Q
    ||||||||||||||||||    
T  4415 ctcttttgatcattcatc 4398  T

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Target: scaffold0425; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 395
Target Start/End: Original strand, 3825 - 3854
Alignment:
Q  366 aggtggcatttcacatgggacacttgaaaa 395  Q
    ||||||||||||||||||||||||||||||    
T  3825 aggtggcatttcacatgggacacttgaaaa 3854  T

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Target: chr7 (Bit Score: 100; Significance: 3e-49; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 436 - 543
Target Start/End: Complemental strand, 325627 - 325520
Alignment:
Q  436 aggttttattaattttgtttgttttttcaaaaggaaaaagaatgcaatatctaataatcttaatatatttcttttgattaatatcatttccttcttctct 535  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  325627 aggttttattaattttgtttggtttttcaaaaggaaaaagaatgcaatatctaataatcgtaatatatttcttttgattaatatcatttccttcttctct 325528  T
Q  536 cttttgat 543  Q
    ||||||||    
T  325527 cttttgat 325520  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 395 - 491
Target Start/End: Complemental strand, 34853346 - 34853249
Alignment:
Q  395 accatgggaaagtcactttttacc-ccacatgtgagtgaaacaggttttattaattttgtttgttttttcaaaaggaaaaagaatgcaatatctaata 491  Q
    ||||| |||||||  ||||||||  |||| ||| |||||||| ||||| | || ||||||||||||||||||||| |||||||||||| ||| |||||    
T  34853346 accataggaaagttgctttttactgccacttgtaagtgaaaccggtttcactatttttgtttgttttttcaaaagaaaaaagaatgcagtatttaata 34853249  T

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Target: chr5 (Bit Score: 83; Significance: 5e-39; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 21 - 205
Target Start/End: Complemental strand, 40568255 - 40568067
Alignment:
Q  21 aaaacatatatcagttacaagggtcaaaagataagacaatatatcagagtaaattaga--ctcaatttagaattcactgctgcaaaaatgatttttctct 118  Q
    |||| ||||||| ||||||||| ||||  ||||||||||||||||||||||||| | |  ||||||| |||||||||||||||||||||||||||||||     
T  40568255 aaaaaatatatccgttacaaggttcaagcgataagacaatatatcagagtaaatcaaattctcaattcagaattcactgctgcaaaaatgatttttctcc 40568156  T
Q  119 tgaagatttgatataattcatgtcaaagtaaattttgcgcatct--agtcattaacatatatcagaaatgttattcttaataacatgca 205  Q
     ||||| |  |||||  ||||||||||||||||||||| |||||  ||||||||| ||||||||||||||| | || || |||||||||    
T  40568155 cgaagactcaatatatatcatgtcaaagtaaattttgcacatctagagtcattaatatatatcagaaatgtgaatcctactaacatgca 40568067  T

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Target: chr5; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 245 - 366
Target Start/End: Original strand, 41467083 - 41467203
Alignment:
Q  245 tgatcaaacaattataatagatagcaggtggattttttgttaaataaagtaggcctaaatacaaatgtaccgtggcccccatatccataagatacaatct 344  Q
    |||||||||||  ||||||||||||| ||| |  ||| ||||||||||||||||||| ||||||||||| | ||| |||||| ||||||| |||||||||    
T  41467083 tgatcaaacaaacataatagatagcaagtgaacatttagttaaataaagtaggcctagatacaaatgtaacatgg-ccccatgtccataatatacaatct 41467181  T
Q  345 aacatttgtatatactttcaaa 366  Q
    |||||||| |||||||||||||    
T  41467182 aacatttgaatatactttcaaa 41467203  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 395 - 491
Target Start/End: Original strand, 31911575 - 31911672
Alignment:
Q  395 accatgggaaagtcactttttacc-ccacatgtgagtgaaacaggttttattaattttgtttgttttttcaaaaggaaaaagaatgcaatatctaata 491  Q
    ||||||| |||||  ||||||||  |||| ||| |||||||| ||||| | || |||||||||||||||||||||||||||||||||| ||| |||||    
T  31911575 accatggaaaagttgctttttactaccacttgtaagtgaaaccggtttcactatttttgtttgttttttcaaaaggaaaaagaatgcagtatttaata 31911672  T

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