View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19163_low_50 (Length: 239)
Name: NF19163_low_50
Description: NF19163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19163_low_50 |
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Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 237
Target Start/End: Original strand, 16463979 - 16464197
Alignment:
| Q |
19 |
gtccagacagcaacacatgtggttatatgcaatgacttatattcccctaaattatcaccagtgacagtgccatagtcatgtctagtgtttatgcttctat |
118 |
Q |
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| T |
16463979 |
gtccagacagcaacacatgtggttatatgcaatgacttatattcccctaaattatcaccggtgacagtgtcatagtcatgtctaatgtttatgcttctat |
16464078 |
T |
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| Q |
119 |
tagtgcttcatatacaagggagaaagaggataaataaagcactaacactttgacactaatagtaatttgagaatatgaaattgttgaatgtaaacacatg |
218 |
Q |
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| T |
16464079 |
tagtgcttcatatacaagggagaaagaggataaataaagcaccaacactttgacaccaatagtaatttgagaaaatgaaattgttgaatgtaaacacatg |
16464178 |
T |
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| Q |
219 |
tttccgcgtcagacatgcc |
237 |
Q |
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| T |
16464179 |
tttccgcgtcagacatgcc |
16464197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 219
Target Start/End: Complemental strand, 3151433 - 3151392
Alignment:
| Q |
178 |
tagtaatttgagaatatgaaattgttgaatgtaaacacatgt |
219 |
Q |
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| T |
3151433 |
tagtaatttgagaaaatggaattgttgaatgtaatcacatgt |
3151392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 219
Target Start/End: Complemental strand, 22131313 - 22131264
Alignment:
| Q |
170 |
gacactaatagtaatttgagaatatgaaattgttgaatgtaaacacatgt |
219 |
Q |
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|||||| ||||||||||||||| |||| |||||| ||||||| ||||||| |
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| T |
22131313 |
gacactgatagtaatttgagaaaatgacattgttcaatgtaatcacatgt |
22131264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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