View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19163_low_53 (Length: 237)
Name: NF19163_low_53
Description: NF19163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19163_low_53 |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 2372656 - 2372877
Alignment:
| Q |
1 |
atgaagaggaaatgaaagatgatgttttcgttgatgttaagattggtggaaaggaaaaggttgtgttctacttcacaagcttaagaggggtgagaaagac |
100 |
Q |
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| T |
2372656 |
atgaagaggaaatgaaagatgatgtttttgtagatgttaagattggtggaaaggaaaaggttgtgttctacttcacaagcttaagaggggtgagaaagac |
2372755 |
T |
|
| Q |
101 |
ttatgaagattgttgccaagtgaggatgattttgagagggttaggagtgagagttgatgagagagatgtatcaatgcatttaggattcaaggaggagcta |
200 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2372756 |
ttatgaagattgttgccaagtaaggatgattttgagagggttaggagtgagagttgatgagagagatgtatcaatgcatttaggattcaaggaggagcta |
2372855 |
T |
|
| Q |
201 |
agagagcttttaggtgatttgt |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
2372856 |
agagagcttttaggtgatttgt |
2372877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 89 - 199
Target Start/End: Original strand, 3377284 - 3377394
Alignment:
| Q |
89 |
ggtgagaaagacttatgaagattgttgccaagtgaggatgattttgagagggttaggagtgagagttgatgagagagatgtatcaatgcatttaggattc |
188 |
Q |
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||||||||| |||||||| ||||||||| ||| |||||| |||||| ||| ||||| | || ||||||||||||||||| ||||||||||||||||| |
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| T |
3377284 |
ggtgagaaaaacttatgaggattgttgcatagttaggatggttttgaaaggattaggcataagggttgatgagagagatgtgtcaatgcatttaggattt |
3377383 |
T |
|
| Q |
189 |
aaggaggagct |
199 |
Q |
| |
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||||| ||||| |
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| T |
3377384 |
aaggaagagct |
3377394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 51 - 190
Target Start/End: Original strand, 21361854 - 21361993
Alignment:
| Q |
51 |
aaggaaaaggttgtgttctacttcacaagcttaagaggggtgagaaagacttatgaagattgttgccaagtgaggatgattttgagagggttaggagtga |
150 |
Q |
| |
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|||||||| || ||||| || ||||||||| || | ||||||||| |||||||| |||||||| |||| ||||||||||||| ||| ||||| | | |
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| T |
21361854 |
aaggaaaaagtggtgttgtatttcacaagcctacgcatggtgagaaaaacttatgagaattgttgcaaagttaggatgattttgaaaggattaggcataa |
21361953 |
T |
|
| Q |
151 |
gagttgatgagagagatgtatcaatgcatttaggattcaa |
190 |
Q |
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| T |
21361954 |
gggttgatgagagatatgtgtcaatacatttaggattcaa |
21361993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 89 - 199
Target Start/End: Complemental strand, 9666261 - 9666151
Alignment:
| Q |
89 |
ggtgagaaagacttatgaagattgttgccaagtgaggatgattttgagagggttaggagtgagagttgatgagagagatgtatcaatgcatttaggattc |
188 |
Q |
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||||||||| ||||||| ||||||||| |||| ||||||||||||| ||| ||||| | || |||| |||||||||||| ||||||||| || ||||| |
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| T |
9666261 |
ggtgagaaaaccttatgaggattgttgcaaagttaggatgattttgaaaggattaggcataagggttggtgagagagatgtgtcaatgcatataagattc |
9666162 |
T |
|
| Q |
189 |
aaggaggagct |
199 |
Q |
| |
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||||| ||||| |
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|
| T |
9666161 |
aaggaagagct |
9666151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 89 - 193
Target Start/End: Complemental strand, 45765284 - 45765180
Alignment:
| Q |
89 |
ggtgagaaagacttatgaagattgttgccaagtgaggatgattttgagagggttaggagtgagagttgatgagagagatgtatcaatgcatttaggattc |
188 |
Q |
| |
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||||||| | |||||||| ||||||| | |||| ||||||||||||| ||| ||||| | || |||||||| |||||||| ||||||||||||||||| |
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| T |
45765284 |
ggtgagataaacttatgaggattgttacaaagttaggatgattttgaaaggattaggcataagggttgatgaaagagatgtgtcaatgcatttaggattt |
45765185 |
T |
|
| Q |
189 |
aagga |
193 |
Q |
| |
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||||| |
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|
| T |
45765184 |
aagga |
45765180 |
T |
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