View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19163_low_58 (Length: 223)
Name: NF19163_low_58
Description: NF19163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19163_low_58 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 17 - 205
Target Start/End: Original strand, 36375615 - 36375803
Alignment:
| Q |
17 |
ttcttggagaacattgaaaagaaaattaactctaatattgatgcggaaaaaatgaagggtatagatgtgcttcgaaaaatcacaaatggttttatcgatg |
116 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36375615 |
ttcttggagaacattgaaaagaaaattaactcaaatattgatgcggaaaaaatgaagggtatagatgtgcttcgaaaaatcacaaatggttttatcgatg |
36375714 |
T |
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| Q |
117 |
tttatgacggtggaagttcttctgatactcttcccggtttgcaaatctatacattgctcgtgaatgcatccgatgaacaacacgagatt |
205 |
Q |
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| T |
36375715 |
tttatgacggtggaagttcttctgatactcttcccggtttgcaaatctatacattgctcgtgaatgcatccgatgaacaacacgagatt |
36375803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 8e-45; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 34 - 201
Target Start/End: Complemental strand, 32190354 - 32190187
Alignment:
| Q |
34 |
aaagaaaattaactctaatattgatgcggaaaaaatgaagggtatagatgtgcttcgaaaaatcacaaatggttttatcgatgtttatgacggtggaagt |
133 |
Q |
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| T |
32190354 |
aaagaaatttaactcagatattgatgaggaaaaaatgaagggtatatatgtgctgcgaaaaatcactagtcgtttcatcgatgtttatgacagtggaaat |
32190255 |
T |
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| Q |
134 |
tcttctgatactcttcccggtttgcaaatctatacattgctcgtgaatgcatccgatgaacaacacga |
201 |
Q |
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| T |
32190254 |
tcttctgatactcttccaggtttacaaatctaaacactgctcatgaatacatctgatgaacaacacga |
32190187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 26 - 205
Target Start/End: Complemental strand, 32249840 - 32249661
Alignment:
| Q |
26 |
aacattgaaaagaaaattaactctaatattgatgcggaaaaaatgaagggtatagatgtgcttcgaaaaatcacaaatggttttatcgatgtttatgacg |
125 |
Q |
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| T |
32249840 |
aacattgaaaagaaaattaactcggatattgatgaggagaagatgcagggtctatatgtgctgcgaaaaatcacttccagttttattgatgtgtacgaca |
32249741 |
T |
|
| Q |
126 |
gtggaagttcttctgatactcttcccggtttgcaaatctatacattgctcgtgaatgcatccgatgaacaacacgagatt |
205 |
Q |
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| T |
32249740 |
gtggaaattcttctgagactcttcctggtttacaaatatatacattgctcatgaatacgtccgacgaacagcatgagatt |
32249661 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 198
Target Start/End: Original strand, 32184795 - 32184974
Alignment:
| Q |
17 |
ttcttggagaacattgaaaagaaaattaactctaatattgatgcggaaaaaatgaagggtatagatgtgcttcgaaaaatcacaaatggttttatcgatg |
116 |
Q |
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|||||||| ||||||| ||||||||||||| | |||| | ||| || ||||||| ||||| || ||||||| | ||||||| | |||||| ||||||| |
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| T |
32184795 |
ttcttggacaacattgcaaagaaaattaacgcaaata-tcatgagggaaaaatgcagggtgtatatgtgctgtg-aaaatcatgagtggtttcatcgatg |
32184892 |
T |
|
| Q |
117 |
tttatgacggtggaagttcttctgatactcttcccggtttgcaaatctatacattgctcgtgaatgcatccgatgaacaaca |
198 |
Q |
| |
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||||||| ||||| || ||||||||||||| || || ||||||||| | ||||| | |||| |||||||||||||| |
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| T |
32184893 |
tttatgaaaatggaaattattctgatactcttttaggattagaaatctataaagtgctcataaatgtgtccgatgaacaaca |
32184974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 206
Target Start/End: Original strand, 32192582 - 32192683
Alignment:
| Q |
104 |
ggttttatcgatgtttatgacggtggaagttcttctgatactcttcccggtttgcaaatctatacattgctcgtgaatgcatccgatgaacaacacgaga |
203 |
Q |
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||||| || ||| |||||||| |||||| ||||| |||||||||| || |||| |||||||| | | ||||| ||||| |||| | ||||||||||| || |
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| T |
32192582 |
ggtttcattgatctttatgacagtggaaattcttatgatactctt-ccagtttacaaatctaaatactgctcatgaatacatctgctgaacaacacgtga |
32192680 |
T |
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| Q |
204 |
ttt |
206 |
Q |
| |
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||| |
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|
| T |
32192681 |
ttt |
32192683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 195
Target Start/End: Complemental strand, 8844389 - 8844211
Alignment:
| Q |
17 |
ttcttggagaacattgaaaagaaaattaactctaatattgatgcggaaaaaatgaagggtatagatgtgcttcgaaaaatcacaaatggttttatcgatg |
116 |
Q |
| |
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|||||||| ||||||| | |||||||||||| ||| |||| ||||||||| ||||| || ||||||| ||||| ||||||| |||| ||||| | |
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| T |
8844389 |
ttcttggacaacattgctaggaaaattaactcagataacgatgaagaaaaaatgcagggtctacatgtgctgcgaaagatcacaagcagtttcatcgacg |
8844290 |
T |
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| Q |
117 |
tttatgacggtggaagttcttctgatactcttcccggtttgcaaatctatacattgctcgtgaatgcatccgatgaaca |
195 |
Q |
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||||||| |||||| ||| |||||||| ||||| ||||| ||||| |||||| ||||| ||||| ||| ||||||||| |
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| T |
8844289 |
tttatgaaagtggaaattcctctgatacacttcctggtttacaaatatatacactgctcatgaatacatacgatgaaca |
8844211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 169
Target Start/End: Original strand, 8823473 - 8823631
Alignment:
| Q |
11 |
agattattcttggagaacattgaaaagaaaattaactctaatattgatgcggaaaaaatgaagggtatagatgtgcttcgaaaaatcacaaatggtttta |
110 |
Q |
| |
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||||| ||| |||| ||||||| | |||||||||||| | | ||||| |||||||||| ||||| || |||||| | ||| ||||| | |||| | |
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| T |
8823473 |
agattcttcatggaaaacattgctaggaaaattaactcacacaatgatgaggaaaaaatgcagggtctacctgtgctgcaaaagatcacgagcagtttca |
8823572 |
T |
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| Q |
111 |
tcgatgtttatgacggtggaagttcttctgatactcttcccggtttgcaaatctataca |
169 |
Q |
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|||| |||||||| |||||| |||||||||||| | ||| ||||| ||||| |||||| |
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| T |
8823573 |
tcgacgtttatgaaagtggaaattcttctgatacacctcctggtttacaaatttataca |
8823631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 136
Target Start/End: Complemental strand, 35959260 - 35959222
Alignment:
| Q |
98 |
acaaatggttttatcgatgtttatgacggtggaagttct |
136 |
Q |
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| T |
35959260 |
acaaatggttttatcgatgtttatgaagctggaagttct |
35959222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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