View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19163_low_6 (Length: 561)

Name: NF19163_low_6
Description: NF19163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19163_low_6
NF19163_low_6
[»] chr5 (7 HSPs)
chr5 (317-543)||(13653505-13653733)
chr5 (120-306)||(13653817-13654003)
chr5 (13-70)||(13654005-13654062)
chr5 (399-543)||(13658978-13659127)
chr5 (483-543)||(13648450-13648510)
chr5 (13-88)||(19100551-19100627)
chr5 (197-261)||(31391866-31391931)
[»] chr4 (2 HSPs)
chr4 (21-68)||(49072686-49072733)
chr4 (197-261)||(35348239-35348303)
[»] chr8 (3 HSPs)
chr8 (62-144)||(10331118-10331200)
chr8 (217-261)||(7883369-7883413)
chr8 (214-261)||(23230560-23230608)
[»] chr7 (3 HSPs)
chr7 (57-135)||(24069371-24069449)
chr7 (76-156)||(5348588-5348668)
chr7 (229-261)||(39171734-39171766)
[»] chr3 (2 HSPs)
chr3 (231-271)||(40556615-40556655)
chr3 (170-261)||(54148902-54148993)
[»] chr2 (1 HSPs)
chr2 (229-261)||(39310996-39311028)
[»] chr1 (2 HSPs)
chr1 (214-261)||(31918906-31918954)
chr1 (214-261)||(45415476-45415524)


Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-104; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 317 - 543
Target Start/End: Complemental strand, 13653733 - 13653505
Alignment:
Q  317 aatacaaaagagacaagac-agtgatcaaattattttatgaggatacagtctttgtccctcgatgtttttgaagtaagtatttcaaatacatacttcttt 415  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  13653733 aatacaaaagagacaagaagagtgatcaaattattttatgaggatacagtctttgtccctcgatgtttttgaagtatgtatttcaaatacatacttcttt 13653634  T
Q  416 ttgtgatgttgataaacataaaaatatgagaagtttctagtaggagaattgtaggggacaccccata-tttatgggctagtagaccttatatagtgaatc 514  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  13653633 ttgtgatgttgatagacataaaaatatgagaagtttttagtaggagaattgtaggggacaccccatattttatgggctagtagaccttatatactgaatc 13653534  T
Q  515 aaatcttggaggttgttgtaggaggaacc 543  Q
    |||||||||||||||||||||||||||||    
T  13653533 aaatcttggaggttgttgtaggaggaacc 13653505  T

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Target: chr5; HSP #2
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 120 - 306
Target Start/End: Complemental strand, 13654003 - 13653817
Alignment:
Q  120 gaactaaatgaacacctcaataagacagtaaatcaaatatgaccacacgcagacgacgaacacaataatgtcgaacatagacgatgaattcacacacaaa 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  13654003 gaactaaatgaacacctcaataagacagtaaatcaaatatgaccacacacagacgacggacacaataatgtcgaacatagacgatgaattcacacacaaa 13653904  T
Q  220 aatacacaagaaaaacttgataaatatgaaaaccacttatttgcatcaaaagtgaagaaaatatcgtgcaaacaggtgattcttaac 306  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||    
T  13653903 aatacacaagaaaaatttgataaatatgaaaaccacttatttgcatcaagagtgaagaaaatattgtgcaaataggtgattcttaac 13653817  T

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Target: chr5; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 13654062 - 13654005
Alignment:
Q  13 aatatgataaatcaaagtgattggaatattcatgtcttaagatatgcaacgttgacgt 70  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13654062 aatatgataaatcaaagtgattggaatattcatgtcttaagatatgcaacgttgacgt 13654005  T

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Target: chr5; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 399 - 543
Target Start/End: Complemental strand, 13659127 - 13658978
Alignment:
Q  399 caaatacatacttctttttgtgatgttgataaaca----taaaaatatgagaagtttctagtaggagaattgtaggggacaccccatat-ttatgggcta 493  Q
    ||||||||||||| ||||| |||| || ||| |||    |||||||||||||||||| |||||||||||||  |||| | |   || || ||||||||||    
T  13659127 caaatacatacttatttttatgatcttcatacacacttataaaaatatgagaagtttttagtaggagaattaaagggaaaaattcacatcttatgggcta 13659028  T
Q  494 gtagaccttatatagtgaatcaaatcttggaggttgttgtaggaggaacc 543  Q
    |||||||||||||| ||||| |||||||||| ||||||||||||||||||    
T  13659027 gtagaccttatatattgaattaaatcttggaagttgttgtaggaggaacc 13658978  T

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Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 483 - 543
Target Start/End: Complemental strand, 13648510 - 13648450
Alignment:
Q  483 tttatgggctagtagaccttatatagtgaatcaaatcttggaggttgttgtaggaggaacc 543  Q
    |||| |||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||    
T  13648510 tttacgggctagtagaccttatatattgaattaaatcttggaagttgttgtaggaggaacc 13648450  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 88
Target Start/End: Original strand, 19100551 - 19100627
Alignment:
Q  13 aatatgataaa-tcaaagtgattggaatattcatgtcttaagatatgcaacgttgacgttgaagtcattgattgaat 88  Q
    ||||||||||| | ||||||| ||||||| |||||||||||||| || |||||||| ||| || |||||||||||||    
T  19100551 aatatgataaaattaaagtgactggaatactcatgtcttaagatctggaacgttgatgttcaaatcattgattgaat 19100627  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 197 - 261
Target Start/End: Original strand, 31391866 - 31391931
Alignment:
Q  197 tagacgatgaattcacacacaaaaatacacaag-aaaaacttgataaatatgaaaaccacttattt 261  Q
    ||||||| ||| ||||| | ||||||||| ||| ||||||||||||||| ||||||||||||||||    
T  31391866 tagacgacgaaatcacaaaaaaaaatacataaggaaaaacttgataaatgtgaaaaccacttattt 31391931  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 49072686 - 49072733
Alignment:
Q  21 aaatcaaagtgattggaatattcatgtcttaagatatgcaacgttgac 68  Q
    |||| ||||||||||||||||| |||||| | ||||||||||||||||    
T  49072686 aaatgaaagtgattggaatatttatgtctcaggatatgcaacgttgac 49072733  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 197 - 261
Target Start/End: Complemental strand, 35348303 - 35348239
Alignment:
Q  197 tagacgatgaattcacacacaaaaatacacaagaaaaacttgataaatatgaaaaccacttattt 261  Q
    ||||||| ||| ||||| | ||||| ||| |||||||||||||||  | ||||||||||||||||    
T  35348303 tagacgacgaaatcacaaaaaaaaacacaaaagaaaaacttgatatttgtgaaaaccacttattt 35348239  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 62 - 144
Target Start/End: Complemental strand, 10331200 - 10331118
Alignment:
Q  62 cgttgacgttgaagtcattgattgaatctgcaattgatcgagactgacatttcaatttgaactaaatgaacacctcaataaga 144  Q
    |||||||||| || | |||||||||||||   ||||||| | ||| | |||||||| ||||| ||||||||||| ||||||||    
T  10331200 cgttgacgttcaaattattgattgaatctttgattgatcaaaactaatatttcaatatgaaccaaatgaacaccacaataaga 10331118  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 217 - 261
Target Start/End: Original strand, 7883369 - 7883413
Alignment:
Q  217 aaaaatacacaagaaaaacttgataaatatgaaaaccacttattt 261  Q
    ||||| ||| ||||||||||||||| || ||||||||||||||||    
T  7883369 aaaaacacaaaagaaaaacttgatagatgtgaaaaccacttattt 7883413  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 214 - 261
Target Start/End: Complemental strand, 23230608 - 23230560
Alignment:
Q  214 cacaaaaatacacaagaaaaa-cttgataaatatgaaaaccacttattt 261  Q
    |||||||| ||| |||||||| ||||||| |||||||||||||||||||    
T  23230608 cacaaaaacacaaaagaaaaaacttgatagatatgaaaaccacttattt 23230560  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 57 - 135
Target Start/End: Original strand, 24069371 - 24069449
Alignment:
Q  57 tgcaacgttgacgttgaagtcattgattgaatctgcaattgatcgagactgacatttcaatttgaactaaatgaacacc 135  Q
    ||||||||||||||| || |||||||||||| |||  |||||||||  |||| |||||||| ||||  ||| |||||||    
T  24069371 tgcaacgttgacgttcaaatcattgattgaacctgtgattgatcgaagctgatatttcaatatgaatcaaacgaacacc 24069449  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 76 - 156
Target Start/End: Original strand, 5348588 - 5348668
Alignment:
Q  76 tcattgattgaatctgcaattgatcgagactgacatttcaatttgaactaaatgaacacctcaataagacagtaaatcaaa 156  Q
    |||||||||||||||| ||||||| || | |||  |||||||  |||| ||| ||||||| |||||||||  |||||||||    
T  5348588 tcattgattgaatctgtaattgattgaaattgatctttcaataggaaccaaacgaacaccgcaataagacgataaatcaaa 5348668  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 229 - 261
Target Start/End: Original strand, 39171734 - 39171766
Alignment:
Q  229 gaaaaacttgataaatatgaaaaccacttattt 261  Q
    ||||||||||||| |||||||||||||||||||    
T  39171734 gaaaaacttgatagatatgaaaaccacttattt 39171766  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 231 - 271
Target Start/End: Complemental strand, 40556655 - 40556615
Alignment:
Q  231 aaaacttgataaatatgaaaaccacttatttgcatcaaaag 271  Q
    ||||||||||| |||||||||||||||||||  ||||||||    
T  40556655 aaaacttgatagatatgaaaaccacttatttatatcaaaag 40556615  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 170 - 261
Target Start/End: Complemental strand, 54148993 - 54148902
Alignment:
Q  170 agacgacgaacacaataatgtcgaacatagacgatgaattcacacacaaaaatacacaagaaaaa-cttgataaatatgaaaaccacttattt 261  Q
    ||||||||||||  | |||| || || ||||||| ||| ||||| | ||||||||| |||||||| ||||||| || ||||||||||||||||    
T  54148993 agacgacgaacaacacaatgccgcacttagacgacgaaatcacaaa-aaaaatacaaaagaaaaaacttgatagatgtgaaaaccacttattt 54148902  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 229 - 261
Target Start/End: Original strand, 39310996 - 39311028
Alignment:
Q  229 gaaaaacttgataaatatgaaaaccacttattt 261  Q
    |||||||||||||||| ||||||||||||||||    
T  39310996 gaaaaacttgataaatgtgaaaaccacttattt 39311028  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 214 - 261
Target Start/End: Complemental strand, 31918954 - 31918906
Alignment:
Q  214 cacaaaaatacacaagaaaaa-cttgataaatatgaaaaccacttattt 261  Q
    |||||||||||| |||||||| ||||||| || ||||||||||||||||    
T  31918954 cacaaaaatacaaaagaaaaaacttgatatatgtgaaaaccacttattt 31918906  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 214 - 261
Target Start/End: Complemental strand, 45415524 - 45415476
Alignment:
Q  214 cacaaaaatacacaagaaaaa-cttgataaatatgaaaaccacttattt 261  Q
    |||||||| |||||||||||| ||||||| || ||||||||||||||||    
T  45415524 cacaaaaaaacacaagaaaaaacttgatagatgtgaaaaccacttattt 45415476  T

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