View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19163_low_7 (Length: 524)
Name: NF19163_low_7
Description: NF19163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19163_low_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 19 - 514
Target Start/End: Original strand, 327898 - 328406
Alignment:
| Q |
19 |
actatacttcccactctcgttataaacaacagacaatatagaggtatgtgacagccttccaaggttttatattgaaattgtacattaatgcaattgattt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
327898 |
actatacttcccactctcgttataaacaacagacaatatagaggtatgtgacagccttccaaggttttatattgaaattgtacattaatgcaattgatgt |
327997 |
T |
|
| Q |
119 |
ggccgcgattgcagttgcaaatatgattgtcagaatctaaaacattaatattgcacctgaaactacagtttaaaactttgaatgatcactatttaatttt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
327998 |
ggccgcgattgcagttgcaaatatgattgtcagaatctaaaacattaatattgcacctgaaactacagtttaaaactttgaatgatcactatttaatttt |
328097 |
T |
|
| Q |
219 |
gtctctattgttgtaatatcatattttgttttgaactggtatttaggcaaactgtcaaaagcagcagtactcaaggcaatctgtgcaagtttccaagaga |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
328098 |
gtctctattgttgtaatatcatattttgttttgaactggta-ttaggcaaactgtcaaaagcagcagtactcaaggcaatctgtgcaagtttccaagaga |
328196 |
T |
|
| Q |
319 |
ccactgagccatctatttgtttaactccaggtctttattcttttctccataaacttatattctcaaatatcctacgagatgaaatattatctaccttctc |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
328197 |
ccactgagccatctatttgtttaactccaggtctttattcttttctccataaacttatattctcaaatatcctaggagatgaaatattatctaccttctc |
328296 |
T |
|
| Q |
419 |
aattattt--------------tcctttggctcacttggtaatgtgtgatgtgttgttgttgactcttacattcttttggataaaataaatgatatatct |
504 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
328297 |
aattattttccttttgcaagcatcctttggctcacttggtaatgtgtgatgtgttgttgttgactcttacattcttttggataaaataaatgatatatct |
328396 |
T |
|
| Q |
505 |
tgaacctttg |
514 |
Q |
| |
|
|||||||||| |
|
|
| T |
328397 |
tgaacctttg |
328406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 271 - 353
Target Start/End: Complemental strand, 27412630 - 27412548
Alignment:
| Q |
271 |
tgtcaaaagcagcagtactcaaggcaatctgtgcaagtttccaagagaccactgagccatctatttgtttaactccaggtctt |
353 |
Q |
| |
|
|||||| | |||| || ||||||||||| |||||| ||||||||||||||||||| ||||| ||||| ||||||||||||||| |
|
|
| T |
27412630 |
tgtcaagaccagcggttctcaaggcaatgtgtgcaggtttccaagagaccactgaaccatcaatttgcttaactccaggtctt |
27412548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 27412763 - 27412709
Alignment:
| Q |
19 |
actatacttcccactctcgttataaacaacagacaatatagaggtatgtgacagc |
73 |
Q |
| |
|
|||||||| || ||||| ||||||||||||||||| || ||||||||| |||||| |
|
|
| T |
27412763 |
actatactgcctactcttgttataaacaacagacagtacagaggtatgagacagc |
27412709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University