View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19163_low_9 (Length: 496)
Name: NF19163_low_9
Description: NF19163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19163_low_9 |
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| [»] scaffold0329 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 377; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 17 - 481
Target Start/End: Complemental strand, 35128339 - 35127867
Alignment:
| Q |
17 |
aggaagatcttgtaaagagaattaggaaccatcagtaaagatgtcccactaaa-tttaggattaatatgtaacttgttgcataattaggattattctcac |
115 |
Q |
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| T |
35128339 |
aggaagatcttgtaaagagaattaggaaccatcagtaaagatgtcccaataaaatttaggattattatgtaacttgttacataattaggattattctcac |
35128240 |
T |
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| Q |
116 |
tatttattatcgttgatatattttatatttttgacaaaaacaaatctttagacatattgtatagcag-tattgtgtaatgggagttatttatccatcttg |
214 |
Q |
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| T |
35128239 |
tatttattatcgtatatatattttatatttttgacaaaaacaaatctttatacatattgtatagcagttattgtgtaatgggagttatttatccatcttg |
35128140 |
T |
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| Q |
215 |
tccttcatctttttgtcttctcctcaagataatctcttcgtaactcatacc-----attttgtctataaccatccaacacgccattaactaacttgccta |
309 |
Q |
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| T |
35128139 |
tccttcatctttttgtcttctcctcaagacaatctcttcgtaactcataccaatttaatttgtctataaccatccaacacgccattaactaacttgccta |
35128040 |
T |
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| Q |
310 |
ttcgaa-gcttgaacacttgtaatgcacaacgatgaagccacactaattgaaatcaggcacctacaaaatttggcttcggatccacctgataaagagcat |
408 |
Q |
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||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
35128039 |
ttctaaggcttgaacacttgtaatgcacaacgatgaagccacactaattgaaatcaggcacctacaaaatttggcttaggatccacctgataaagagcat |
35127940 |
T |
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| Q |
409 |
cttttaatgcatgagagaacgcaagacgacaagtatgaagtataatatccatagtgatcataggtgtttgaag |
481 |
Q |
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| T |
35127939 |
cttttaatgcatgagagaatgcaagacgacaagtatgaggtataatatccatagtgatgataggtgtttgaag |
35127867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 318 - 481
Target Start/End: Complemental strand, 35150033 - 35149870
Alignment:
| Q |
318 |
ttgaacacttgtaatgcacaacgatgaagccacactaattgaaatcaggcacctacaaaatttggcttcggatccacctgataaagagcatcttttaatg |
417 |
Q |
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|||||||| ||||||| |||||||||||||| | ||||||| ||| ||||||| | ||| |||||| ||||||| ||||||||||| |||||||||| |
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| T |
35150033 |
ttgaacacctgtaatgagcaacgatgaagccatatcaattgaactcaagcacctagagaatatggcttaggatccatctgataaagagtgtcttttaatg |
35149934 |
T |
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| Q |
418 |
catgagagaacgcaagacgacaagtatgaagtataatatccatagtgatcataggtgtttgaag |
481 |
Q |
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| T |
35149933 |
cctaagagaatgcaagacgataagtatgaggtatactcttcatagtgatgataggtgtttgaag |
35149870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 224 - 301
Target Start/End: Complemental strand, 35150218 - 35150140
Alignment:
| Q |
224 |
tttttgtcttctcctcaagataatctcttcg-taactcataccattttgtctataaccatccaacacgccattaactaa |
301 |
Q |
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| T |
35150218 |
tttttgtcttctcctcaaaattatatcctccataactcataccatcttgtctataaccctccaacacaccatcaactaa |
35150140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 391 - 440
Target Start/End: Complemental strand, 6921615 - 6921566
Alignment:
| Q |
391 |
ccacctgataaagagcatcttttaatgcatgagagaacgcaagacgacaa |
440 |
Q |
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| T |
6921615 |
ccacccgataaagagcatcttttaatgcctgagagaatgcaaaacgacaa |
6921566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0329 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0329
Description:
Target: scaffold0329; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 396 - 432
Target Start/End: Complemental strand, 16769 - 16733
Alignment:
| Q |
396 |
tgataaagagcatcttttaatgcatgagagaacgcaa |
432 |
Q |
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| T |
16769 |
tgataaagagcatcttttaatgcctgagagaatgcaa |
16733 |
T |
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