View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19164_high_4 (Length: 331)
Name: NF19164_high_4
Description: NF19164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19164_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 305; Significance: 1e-172; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 1481942 - 1482261
Alignment:
| Q |
1 |
actaatcttattcacaaatctaaattctatcacaataagacaaacattgtctaaatttgttttacaagttagttacattatgaattaagttattgttgtt |
100 |
Q |
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| T |
1481942 |
actaatcgtattcacaaatctaaattctatcacaataagacaaacattgtctaaatttgttttacaagttagttacattatgaattaagttattgttgtt |
1482041 |
T |
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| Q |
101 |
aatattctgttgttttgttgatttgttatgtgatgatgagtgttctgtatatttagttctatctgattagtttgaatttgaattaatttagtgttgttaa |
200 |
Q |
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| T |
1482042 |
aatattctgttgttttgttgatttgttatgtgatgatgagtgtt---tatatttagttctatctgattagtttgaatttgaattaatttagtgttgttaa |
1482138 |
T |
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| Q |
201 |
tattgtgtttaggcgattgagagaaggagggagagactgggaactgaggagattgagcaaactggaacaccagttcatgctaaccagctgaccattttct |
300 |
Q |
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| T |
1482139 |
tattgtgtttaggcgattgagagaaggagggagagactgggaactgaggagattgagcaaactggaacaccagttcatgctaaccagctgaccattttct |
1482238 |
T |
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| Q |
301 |
ctgatccatcttcattctctgct |
323 |
Q |
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||||||||||||||||||||||| |
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| T |
1482239 |
ctgatccatcttcattctctgct |
1482261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 134 - 323
Target Start/End: Original strand, 36716860 - 36717049
Alignment:
| Q |
134 |
tgatgagtgttctgtatatttagttctatctgattagtttgaatttgaattaatttagtgttgttaatattgtgtttaggcgattgagagaaggagggag |
233 |
Q |
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| T |
36716860 |
tgatgaattttctgtatgtttagttccatcttattaatttgaatatgaactaaattagtgttgttaatattgtgtttaggcgattgagagaaggagggag |
36716959 |
T |
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| Q |
234 |
agactgggaactgaggagattgagcaaactggaacaccagttcatgctaaccagctgaccattttctctgatccatcttcattctctgct |
323 |
Q |
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| T |
36716960 |
agacagggaactgaggaaattgagcaaactggaacaccagttcatgctaaccagctgaccattttctctgatccatcttcattctctgct |
36717049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 11 - 62
Target Start/End: Original strand, 49191237 - 49191288
Alignment:
| Q |
11 |
ttcacaaatctaaattctatcacaataagacaaacattgtctaaatttgttt |
62 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
49191237 |
ttcacaaatctaaattctatcacaataagacaaacattctctaagtttgttt |
49191288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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