View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19164_low_1 (Length: 473)
Name: NF19164_low_1
Description: NF19164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19164_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 21 - 461
Target Start/End: Original strand, 942055 - 942507
Alignment:
| Q |
21 |
ctcgatacacaattggtccgcatttgacatttgtttccattcatttcttggtttaattgattttggaatttagaaaagatact---------aagtcgaa |
111 |
Q |
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| T |
942055 |
ctcgatacacatttggtccgcatttgacatttgtttccattcatttcttggtttaattgattttggaatttagagaagatacttaactgtttaagtcgaa |
942154 |
T |
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| Q |
112 |
atatgttttgttcgactttcattaccaattatggtggcttgatcctattaaccgtataactgca-ttacttaacttatgtgcnnnnnnnnnnnnnnnnnn |
210 |
Q |
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| T |
942155 |
atatgttttgttcgactttcattaccaattatggtggcttgatcctattaaccgtataactgcagttacttaacttatgtgcttttgttttttgtttgct |
942254 |
T |
|
| Q |
211 |
nnnntactattattgtactctggttctctaagatacattctttagtacaccttgtgttgtagtggtctgttttggtttgttaataatatatttgtgctct |
310 |
Q |
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| T |
942255 |
tttatactattattgtactttggttctctgacagacattctttagtacaccttgtgttgctgtggtctgttttggtttgttaataatatatttgtgctct |
942354 |
T |
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| Q |
311 |
tttttcactcnnnnnnnnn-ta-atatttgtgatctttttggcctttnnnnnnngaatgtttaattgctttgatgatttattttttgaggggtgctttga |
408 |
Q |
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| T |
942355 |
tttttcactcaaaaaaaatatatatatttgtgatctttttggcctttaaaaaaagaatgtttaattgctttgatgatttattttttgaggggtgctttaa |
942454 |
T |
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| Q |
409 |
tgaattaattatataggtggtttatgccgttaaatattcttctgagatatatt |
461 |
Q |
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| T |
942455 |
tgaattaattatataggtggtttatgccgttaaatattcttctgagatatatt |
942507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 103 - 175
Target Start/End: Original strand, 38037573 - 38037645
Alignment:
| Q |
103 |
taagtcgaaatatgttttgttcgactttcattaccaattatggtggcttgatcctattaaccgtataactgca |
175 |
Q |
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| T |
38037573 |
taagtcgaaatatgttttgttcgattttgattaccaattatggaggttaaatcctatttaccgtttaactgca |
38037645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 248 - 295
Target Start/End: Original strand, 38037717 - 38037764
Alignment:
| Q |
248 |
ttctttagtacaccttgtgttgtagtggtctgttttggtttgttaata |
295 |
Q |
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| T |
38037717 |
ttctttcgtataccttgtgttgaagtggtatgttttggtttgttaata |
38037764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 108 - 175
Target Start/End: Complemental strand, 12343371 - 12343304
Alignment:
| Q |
108 |
cgaaatatgttttgttcgactttcattaccaattatggtggcttgatcctattaaccgtataactgca |
175 |
Q |
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| T |
12343371 |
cgaaataagttttgttcgactttgattaccaattatggaggattgatcttattaactgtttaactgca |
12343304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 103 - 159
Target Start/End: Complemental strand, 7129327 - 7129271
Alignment:
| Q |
103 |
taagtcgaaatatgttttgttcgactttcattaccaattatggtggcttgatcctat |
159 |
Q |
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| T |
7129327 |
taagtcgaaatatgttttattcgactttgattaccaattctggaggcttaatcctat |
7129271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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