View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19165_high_1 (Length: 692)

Name: NF19165_high_1
Description: NF19165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19165_high_1
NF19165_high_1
[»] chr7 (12 HSPs)
chr7 (1-692)||(8356508-8357199)
chr7 (1-225)||(8365320-8365545)
chr7 (325-520)||(8351491-8351686)
chr7 (319-520)||(8412762-8412961)
chr7 (104-285)||(8351749-8351935)
chr7 (5-105)||(8351999-8352099)
chr7 (208-285)||(8413019-8413097)
chr7 (320-451)||(8365084-8365211)
chr7 (326-416)||(8427496-8427586)
chr7 (477-573)||(8364866-8364960)
chr7 (175-285)||(8531730-8531847)
chr7 (327-389)||(8531503-8531565)
[»] chr4 (2 HSPs)
chr4 (108-245)||(7287171-7287306)
chr4 (28-103)||(7287047-7287122)
[»] scaffold0141 (1 HSPs)
scaffold0141 (466-545)||(8943-9022)


Alignment Details
Target: chr7 (Bit Score: 575; Significance: 0; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 1 - 692
Target Start/End: Complemental strand, 8357199 - 8356508
Alignment:
Q  1 ttgattgttct-ttgacaagttttattatgtttatgtttatagcacctatatatgatctgaacttatgcttatttaaataatcgttgttataatttactt 99  Q
    ||||||||||| |||  ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  8357199 ttgattgttctgttgcaaagttttattatgttcatgtttatagcacctatgtatgatctgaacttatgcttatttaaattatcgttgttataatttactt 8357100  T
Q  100 tggctaatcaaaataaaacactccataactattatgtcacaaaacactggccgaaaatgtttata-tgccttcgtcgtcctagaatctaatccaacattg 198  Q
    ||  |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  8357099 tgt-taatcaaaataaaacactccataactattatgtcacaaaacactggtcgaaaatgtttatactgccttcgtcgtcctagaatctaattcaacattg 8357001  T
Q  199 taaaaatactagaaattacaggaattg-gttataccttttagaacataataatttgatgactagatttttaaacgagaccaaaaccacactaaaggtgtc 297  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||    
T  8357000 taaaaatactagaaattacaggaattgagttataccttttagaacataataatttgatgactagatttttaaacgagaccaaaaccac--taaagttgtc 8356903  T
Q  298 agtatctgaatcaaactatatttttagagaatgaatgcatgtagcagtaactgtagtttctgatgtcgtggtttatgttttcgcatctcctttagtattt 397  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  8356902 agtatctgaatcaaactatatttttagagaatgaatgcatgtagcagtaactgtagtttctgatgtcgtggtttattttttcgcatctcctttagtattt 8356803  T
Q  398 ctcatgatgaattttagatcggaacatgattagaaaaagattgaaacatctgttcttatctctacaaggaaatgatatgttacttaatcgcatgaatcat 497  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  8356802 ctcatgatgaattttagatcggaacatgattagaaaaagattgaagcatttgttcttatttctacaaggaaatgatatgttacttaatcgcatgaatcat 8356703  T
Q  498 ttttagcatttatggtgcagccttgtgaagctgaaagaatttgtgctttgcattatttcagatgtttatgattaccatcttctttctcatcttttaatcg 597  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8356702 ttttagcatttatgttgcagccttgtgaagctgaaagaatttgtgctttgcattatttcagatgtttatgattaccatcttctttctcatcttttaatcg 8356603  T
Q  598 catgaagcatttttagcattttcagtggcttagtcttactacgtgtttgggttttgtcacctaacttgtgnnnnnnngttcatataatttgtttg 692  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||    
T  8356602 catgaagcatttttagcattttcagtggcttagtcttactacgtgtttgggttttgtcacctaacttgtgtttttttgttcatataatttgtttg 8356508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 8365545 - 8365320
Alignment:
Q  1 ttgattgttctttgacaagttttattatgtttatgtttatagcacctatatatgatctgaacttatgcttatttaaataatcgttgttataatttacttt 100  Q
    ||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||  |||||||||||||| ||||||| ||||||||||||||||||    
T  8365545 ttgattgttctttggtaagttttattatgttgatgtttatagcacctatatatgatccaaacttatgcttattgaaataattgttgttataatttacttt 8365446  T
Q  101 ggctaatcaaaataaaacactccataactattatgtcacaaaacactggccgaaaatgtttata-tgccttcgtcgtcctagaatctaatccaacattgt 199  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||| ||| ||||| |||||||||  ||||||||||||||    
T  8365445 ggctgatcaaaataacacactccataactattatgtcacaaaacactggctgaaaatctttatactgctttcgttgtcctagaagttaatccaacattgt 8365346  T
Q  200 aaaaatactagaaattacaggaattg 225  Q
    ||||||||||||| ||  ||||||||    
T  8365345 aaaaatactagaatttgaaggaattg 8365320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 325 - 520
Target Start/End: Complemental strand, 8351686 - 8351491
Alignment:
Q  325 agaatgaatgcatgtagcagtaactgtagtttctgatgtcgtggtttatgttttcgcatctcctttagtatttctcatgatgaattttagatcggaacat 424  Q
    ||||||||||||||||||||||||||| | ||||||||| ||||||||| ||||||||||||||| | |||||||||||||||||||||||| |||||||    
T  8351686 agaatgaatgcatgtagcagtaactgtgggttctgatgtagtggtttattttttcgcatctccttcaatatttctcatgatgaattttagataggaacat 8351587  T
Q  425 gattagaaaaagattgaaacatctgttcttatctctacaaggaaatgatatgttacttaatcgcatgaatcatttttagcatttatggtgcagcct 520  Q
     |||||||||||||||||  || |||||||||   | ||| |||||||||||||||| ||||||||||||||||||||||||| | ||||||||||    
T  8351586 tattagaaaaagattgaagaatttgttcttattcttgcaaagaaatgatatgttactgaatcgcatgaatcatttttagcattcaaggtgcagcct 8351491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 319 - 520
Target Start/End: Complemental strand, 8412961 - 8412762
Alignment:
Q  319 ttttagagaatgaatgcatgtagcagtaactgtagtttctgatgtcgtggtttatgttttcgcatctcctttagtatttctcatgatgaattttagatcg 418  Q
    |||||| ||||||||||||| |||||||||||| | |||||||   ||||||||| ||||||||||||||| | ||||||||||||||||||||||||      
T  8412961 ttttagtgaatgaatgcatgcagcagtaactgtggcttctgata--gtggtttattttttcgcatctccttcaatatttctcatgatgaattttagatac 8412864  T
Q  419 gaacatgattagaaaaagattgaaacatctgttcttatctctacaaggaaatgatatgttacttaatcgcatgaatcatttttagcatttatggtgcagc 518  Q
    |||||| ||||||||||||||||| ||| |||||||||   | ||| |||||||||||||||| ||||||||||||||||||||||||| | ||||||||    
T  8412863 gaacataattagaaaaagattgaagcatttgttcttattcttgcaaagaaatgatatgttactgaatcgcatgaatcatttttagcattcaaggtgcagc 8412764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 104 - 285
Target Start/End: Complemental strand, 8351935 - 8351749
Alignment:
Q  104 taatcaaaataaaacactccataactattatgtcacaaaacactggccgaaaatgtttata------tgccttcgtcgtcctagaatctaatccaacatt 197  Q
    |||||||||||| |||||||||||||||||||||||||||||||||   ||||||||||||      |||||| |||||| || ||||||||||||||||    
T  8351935 taatcaaaataacacactccataactattatgtcacaaaacactggtaaaaaatgtttatactgcactgcctttgtcgtcatataatctaatccaacatt 8351836  T
Q  198 gtaaaaatactagaaattacaggaattg-gttataccttttagaacataataatttgatgactagatttttaaacgagaccaaaaccac 285  Q
    ||||||||| |||||||||||||||||| |||||||  |||||||||| |||||| |||||||||||||||||||||||||| ||||||    
T  8351835 gtaaaaataatagaaattacaggaattgagttatac--tttagaacatgataattcgatgactagatttttaaacgagaccacaaccac 8351749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 5 - 105
Target Start/End: Complemental strand, 8352099 - 8351999
Alignment:
Q  5 ttgttctttgacaagttttattatgtttatgtttatagcacctatatatgatctgaacttatgcttatttaaataatcgttgttataatttactttggct 104  Q
    ||||||||||  ||||||||||||||| ||||||||||||||||||||||||   |||||||||||||| ||||||||||||| ||||||||||||||||    
T  8352099 ttgttctttggtaagttttattatgttcatgtttatagcacctatatatgattcaaacttatgcttattgaaataatcgttgtaataatttactttggct 8352000  T
Q  105 a 105  Q
    |    
T  8351999 a 8351999  T

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Target: chr7; HSP #7
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 208 - 285
Target Start/End: Complemental strand, 8413097 - 8413019
Alignment:
Q  208 tagaaattacaggaattg-gttataccttttagaacataataatttgatgactagatttttaaacgagaccaaaaccac 285  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  8413097 tagaaattacaggaattgagttataccttttagaacataataatttgatgactagatttttaaatgagaccacaaccac 8413019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 320 - 451
Target Start/End: Complemental strand, 8365211 - 8365084
Alignment:
Q  320 tttagagaatgaatgcatgtagcagtaactgtagtttctgatgtcgtggtttatgttttcgcatctcctttagtatttctcatgatgaattttagatcgg 419  Q
    |||||||||||||||||||||||||||    | ||||||||||| || |||||| ||||| |||||||||  ||||||||||||| | ||||||||| ||    
T  8365211 tttagagaatgaatgcatgtagcagta----tggtttctgatgttgttgtttattttttctcatctccttcggtatttctcatgacggattttagattgg 8365116  T
Q  420 aacatgattagaaaaagattgaaacatctgtt 451  Q
    | ||||||||||| ||||||||| ||| ||||    
T  8365115 atcatgattagaagaagattgaagcatttgtt 8365084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 326 - 416
Target Start/End: Original strand, 8427496 - 8427586
Alignment:
Q  326 gaatgaatgcatgtagcagtaactgtagtttctgatgtcgtggtttatgttttcgcatctcctttagtatttctcatgatgaattttagat 416  Q
    ||||||||||||| || ||||||||| ||||||||||| ||||||||| ||||| ||||||||| |||||||||||||||| ||| |||||    
T  8427496 gaatgaatgcatgcagtagtaactgtggtttctgatgtagtggtttattttttctcatctccttcagtatttctcatgatggattatagat 8427586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 477 - 573
Target Start/End: Complemental strand, 8364960 - 8364866
Alignment:
Q  477 ttacttaatcgcatgaatcatttttagcatttatggtgcagccttgtgaagctgaaagaatttgtgctttgcattatttcagatgtttatgattacc 573  Q
    ||||||||| ||||||||||||||||||| ||   |||||||||||||| | ||||| ||||||||| |||||| |||| | |||||||||||||||    
T  8364960 ttacttaatggcatgaatcatttttagca-ttccagtgcagccttgtgatgttgaaaaaatttgtgc-ttgcatcatttaaaatgtttatgattacc 8364866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 175 - 285
Target Start/End: Complemental strand, 8531847 - 8531730
Alignment:
Q  175 gtcctagaatctaatccaacattgtaaaaatactagaaattacaggaattg-gttatacct------tttagaacataataatttgatgactagattttt 267  Q
    |||||||||||||||||||||||| |||||||||||||||   |||||||| |||||| ||      |||||| ||| |||| | ||||||| ||||||     
T  8531847 gtcctagaatctaatccaacattggaaaaatactagaaatcttaggaattgagttatatcttcaaaatttagagcattataactggatgacttgattttc 8531748  T
Q  268 aaacgagaccaaaaccac 285  Q
    ||| ||||||||||||||    
T  8531747 aaaagagaccaaaaccac 8531730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 327 - 389
Target Start/End: Complemental strand, 8531565 - 8531503
Alignment:
Q  327 aatgaatgcatgtagcagtaactgtagtttctgatgtcgtggtttatgttttcgcatctcctt 389  Q
    |||||||||||||||| |||||||| || || ||||| ||||||||| ||||| |||||||||    
T  8531565 aatgaatgcatgtagccgtaactgtggtatccgatgtagtggtttattttttctcatctcctt 8531503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 108 - 245
Target Start/End: Original strand, 7287171 - 7287306
Alignment:
Q  108 caaaataaaacactccataactattatgtcacaaaacactggccgaaaatgtttata-tgccttcgtcgtcctagaatctaatccaacattgtaaaaata 206  Q
    |||||||| ||||||||||| ||||||||||    ||| || ||||||||||||||| |||||  ||| |||||||||||||||||| ||||||||||||    
T  7287171 caaaataacacactccataattattatgtca----acattgtccgaaaatgtttatactgcctctgtcctcctagaatctaatccaagattgtaaaaata 7287266  T
Q  207 ctagaaattacaggaattg-gttataccttttagaacata 245  Q
     ||||||| | |||||||| ||||||| ||||||||||||    
T  7287267 gtagaaatcaaaggaattgagttatactttttagaacata 7287306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 28 - 103
Target Start/End: Original strand, 7287047 - 7287122
Alignment:
Q  28 tgtttatgtttatagcacctatatatgatctgaacttatgcttatttaaataatcgttgttataatttactttggc 103  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||    
T  7287047 tgttgatgtttataacacctatatatgatctgaacttatgcttattgaaataatcgttgtaataatttacattggc 7287122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 466 - 545
Target Start/End: Complemental strand, 9022 - 8943
Alignment:
Q  466 gaaatgatatgttacttaatcgcatgaatcatttttagcatttatggtgcagccttgtgaagctgaaagaatttgtgctt 545  Q
    ||||||||| |||||||||| ||||||||||||||||||||| | ||||||||||||||| ||| ||| |||||||||||    
T  9022 gaaatgatacgttacttaatggcatgaatcatttttagcattcaaggtgcagccttgtgatgctaaaacaatttgtgctt 8943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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