View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19165_high_10 (Length: 426)
Name: NF19165_high_10
Description: NF19165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19165_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 7 - 339
Target Start/End: Complemental strand, 5011745 - 5011413
Alignment:
| Q |
7 |
atcccaaggacctttaaacaatatatcaaactttatattaagttcaacatttattttacacacttgagtagctaatgtataaaaacatatttaaaatgat |
106 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5011745 |
atcccaaggacctgtaaacaatatatcaaactttatattaagttcaacaattattttacacacttgagtagctaatgtataaaaacatatttaaaatgat |
5011646 |
T |
|
| Q |
107 |
aaaccacatgtgtttaattcaattactctctagttggaaagggaaaagtgtaggacacaccgactcatacaccgacatgctgacataaataattagttga |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
5011645 |
aaaccacatgtgtttaattcaattactctctagttggaaagggaaaagtgtaggacacacggactcatacaccgacatgctgacataaataattagttga |
5011546 |
T |
|
| Q |
207 |
aaaaatagaataattggatgtaaaccacatgtgtcagtgttgtggtgttccgatgccgaacactagatacgtatttaatctgaagtgtcaatgcaatata |
306 |
Q |
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|||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5011545 |
aaaaatagaataattggatgtaaaccgcatgtgtcagtgtcgtggtgttccaatgccgaacactagatacgtatttaatctgaagtgtcaatgcaatata |
5011446 |
T |
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| Q |
307 |
tttgaaatgactcctacttatataatatttggt |
339 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
5011445 |
tttgaaatgactcctacttatataatatttggt |
5011413 |
T |
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