View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19165_high_14 (Length: 347)
Name: NF19165_high_14
Description: NF19165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19165_high_14 |
 | |
|
| [»] scaffold0154 (2 HSPs) |
| | |
|
| [»] scaffold0189 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0154 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: scaffold0154
Description:
Target: scaffold0154; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 39 - 330
Target Start/End: Complemental strand, 15404 - 15110
Alignment:
| Q |
39 |
ccatatataaaggaaggaaagggtttcttgattattggaagccatccacaattagttgagttttctttcttctccacaaagcnnnnnnnnnnnn---cca |
135 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
15404 |
ccatatataaaggaaggaaagggtttcttgattattggaagccatccacaattagttgagttttctttcttctccacaaagcaaaaaaaacaaaaaacca |
15305 |
T |
|
| Q |
136 |
aaaccatagaacaaaacaacaattgcaagatggattgggtacgaggagaaactgttggaagaggaagctttgcaactgttaatttagttatacccaaaag |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15304 |
aaaccatagaacaaaacaacaattgcaagatggattgggtacgaggagaaactgttggaagaggaagctttgcaactgttaatttagttatacccaaaag |
15205 |
T |
|
| Q |
236 |
caattcaaattcaactccgacagccgtcaaaacatcagaggtttcaacctcgtcttcactcaaaaacgagaaacatgttcttcatcaacttggtt |
330 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
15204 |
caattcaaattccactccgacagccgtcaaaacatccgaggtttcaacctcgtcttcactcaaaaacgagaaatatgttcttcatcaacttggtt |
15110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0154; HSP #2
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 147 - 330
Target Start/End: Complemental strand, 24713 - 24530
Alignment:
| Q |
147 |
caaaacaacaattgcaagatggattgggtacgaggagaaactgttggaagaggaagctttgcaactgttaatttagttatacccaaaagcaattcaaatt |
246 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||| ||| ||||||| ||| |
|
|
| T |
24713 |
caaaacaacaattctcagatggattgggtacgaggaaaaacagttggaagaggaagctttgcaactgttaatttagctatacctaaagccaattcatatt |
24614 |
T |
|
| Q |
247 |
caactccgacagccgtcaaaacatcagaggtttcaacctcgtcttcactcaaaaacgagaaacatgttcttcatcaacttggtt |
330 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24613 |
caaccccgacagccgtcaaaacatccgaggtttcaacctcgtcttcactcaaaaacgagaaacatgttcttcatcaacttggtt |
24530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0189 (Bit Score: 138; Significance: 4e-72; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 165 - 330
Target Start/End: Original strand, 61 - 226
Alignment:
| Q |
165 |
atggattgggtacgaggagaaactgttggaagaggaagctttgcaactgttaatttagttatacccaaaagcaattcaaattcaactccgacagccgtca |
264 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||| |
|
|
| T |
61 |
atggattgggtacgaggagaagctgttggaagaggtagttttgcaactgttaatttagttatacccaaaggaaattcatattcaactccgacagccgtca |
160 |
T |
|
| Q |
265 |
aaacatcagaggtttcaacctcgtcttcactcaaaaacgagaaacatgttcttcatcaacttggtt |
330 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
161 |
aaacatccgaggtttcaacctcgtcttcactcaaaaacgagaaacatgttcttcatcaacttggtt |
226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University