View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19165_high_2 (Length: 562)
Name: NF19165_high_2
Description: NF19165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19165_high_2 |
 | |
|
| [»] scaffold0186 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0186 (Bit Score: 150; Significance: 5e-79; HSPs: 1)
Name: scaffold0186
Description:
Target: scaffold0186; HSP #1
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 60 - 516
Target Start/End: Original strand, 5995 - 6450
Alignment:
| Q |
60 |
gaaaggtggagaaatgttgttttgtgcatcaacaatcattgtatgtatttatcattttctatcggcttaatcattattcttacttaccnnnnnnnnnnnn |
159 |
Q |
| |
|
|||||| ||| || ||||| |||||||||||| |||||| ||||||||| ||||||| ||||| ||||||| ||||||| ||||| || |
|
|
| T |
5995 |
gaaaggaggataactgttgctttgtgcatcaagaatcatagtatgtattgatcatttcctatcagcttaataattattcgtacttgcctaaaaatact-- |
6092 |
T |
|
| Q |
160 |
ttatcatcattttctccctataatcatgataatgatagtagtcaccaccacacttctccaaacgtagaactattaaaatgttttaaaacatataaccaat |
259 |
Q |
| |
|
| || |||||||||| |||||| |||||||||||||||||| ||||||||||| | | ||||| |||||| ||| || ||| |||||||||| ||||||| |
|
|
| T |
6093 |
taataatcattttcttcctatattcatgataatgatagtaggcaccaccacacctattcaaacttagaaccattcaagtgtcttaaaacatagaaccaat |
6192 |
T |
|
| Q |
260 |
tttataatgatttcttttaaaaaagacgaattttttaatttgtttaactttagaacatgatcacatgatatcatattttatcgaaacaattgacacattg |
359 |
Q |
| |
|
|||||||||||||| ||| ||||||| |||||| | ||||||| |||||||||| |||||| |||||||||||||| || ||||||||||||||| | |
|
|
| T |
6193 |
tttataatgatttc-tttcaaaaagatgaatttatagatttgttgaactttagaaaatgatctaatgatatcatatttcatggaaacaattgacacacta |
6291 |
T |
|
| Q |
360 |
tttgatttattactaaaagtaattgtggat-atgaaacttctcataatatttgaatggttagtcatattcttatagtggtttaatggttcaaaaacaact |
458 |
Q |
| |
|
|||||||| |||||||| ||| ||||||| || ||||| |||||||| ||||||| ||||||||||| || |||||| |||||||||||||| | | |
|
|
| T |
6292 |
tttgatttgttactaaaggtatatgtggatgatcaaactattcataatacttgaatgattagtcatatttttgtagtggcttaatggttcaaaacaattt |
6391 |
T |
|
| Q |
459 |
tcggagtgttgatttaacttaa-taaaaaatggttttaggacatttcaattattacaat |
516 |
Q |
| |
|
| || ||||||||||||||||| || ||| | |||||||||||||||||||| |||||| |
|
|
| T |
6392 |
ttggggtgttgatttaacttaattataaattagttttaggacatttcaattactacaat |
6450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 85; Significance: 3e-40; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 12 - 118
Target Start/End: Original strand, 2043780 - 2043883
Alignment:
| Q |
12 |
gaatatgggacaagcggtggatgccgctgtggctgctgctctttattagaaaggtggagaaatgttgttttgtgcatcaacaatcattgtatgtatttat |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
2043780 |
gaatatgggacaagcggtggatgccgctgtggctgctgctcttta---gaaaggaggagaaatgttgctttgtgcatcaacaatcattgtatgtatttat |
2043876 |
T |
|
| Q |
112 |
cattttc |
118 |
Q |
| |
|
||||||| |
|
|
| T |
2043877 |
cattttc |
2043883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 458 - 516
Target Start/End: Original strand, 112461 - 112519
Alignment:
| Q |
458 |
ttcggagtgttgatttaacttaataaaaaatggttttaggacatttcaattattacaat |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
112461 |
ttcggagtgttgatttaacttaataaaaaatggttttaggacatttcaattactacaat |
112519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 162 - 212
Target Start/End: Original strand, 134678 - 134728
Alignment:
| Q |
162 |
atcatcattttctccctataatcatgataatgatagtagtcaccaccacac |
212 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
134678 |
atcattattttctccctataatcatgataatgatagtagtcaccacgacac |
134728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 336
Target Start/End: Original strand, 112315 - 112346
Alignment:
| Q |
305 |
aactttagaacatgatcacatgatatcatatt |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
112315 |
aactttagaacatgatcacatgatatcatatt |
112346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 162 - 200
Target Start/End: Original strand, 112238 - 112276
Alignment:
| Q |
162 |
atcatcattttctccctataatcatgataatgatagtag |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |||| |
|
|
| T |
112238 |
atcataattttctccctataatcatgataatgatggtag |
112276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 18872505 - 18872592
Alignment:
| Q |
18 |
gggacaagcggtggatgccgctgtggctgctgctctttattagaaaggtggagaaatgttgttttgtgcatcaacaatcattgtatgtatt |
108 |
Q |
| |
|
||||||| | |||||||| | |||||||||| |||||| |||||| ||| || ||||| |||||||||||||||||| ||||||||| |
|
|
| T |
18872505 |
gggacaatcagtggatgcagttgtggctgctactctttt---gaaaggaggataactgttgctttgtgcatcaacaatcacagtatgtatt |
18872592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University