View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19165_high_22 (Length: 249)

Name: NF19165_high_22
Description: NF19165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19165_high_22
NF19165_high_22
[»] chr3 (2 HSPs)
chr3 (1-241)||(28970025-28970265)
chr3 (12-68)||(24991946-24992002)
[»] chr6 (3 HSPs)
chr6 (15-110)||(9239185-9239282)
chr6 (134-191)||(9238870-9238927)
chr6 (5-68)||(34105400-34105463)
[»] chr2 (1 HSPs)
chr2 (6-112)||(3985441-3985546)
[»] chr4 (4 HSPs)
chr4 (9-68)||(12470042-12470101)
chr4 (9-68)||(12470611-12470670)
chr4 (12-70)||(26474830-26474888)
chr4 (10-70)||(12489812-12489872)
[»] chr1 (3 HSPs)
chr1 (5-68)||(32876657-32876720)
chr1 (141-204)||(51080182-51080245)
chr1 (158-207)||(27335251-27335300)
[»] chr5 (1 HSPs)
chr5 (132-185)||(13963994-13964047)
[»] scaffold0157 (1 HSPs)
scaffold0157 (10-70)||(30605-30665)


Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 28970025 - 28970265
Alignment:
Q  1 tttaggtgccatagtgatttgttaatggagtatggtgggccgatctcttttgcttcgagattgggagttaatttatagactaaagtcagttgaacttgtt 100  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28970025 tttaggtgccatagtgatttgttaatagagtatggtgggccgatcttttttgcttcgagattgggagttaatttatagactaaagtcagttgaacttgtt 28970124  T
Q  101 atggtgtcttcttcgatgaatagggggccgatggtggtgtaatccaaatgagtattgaaataagtgtttttgaggtgtttatttgagctcaactgtggga 200  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  28970125 atggtgtcttcttcgacgaatagggggccgatggtggtgtcatccaaatgagtattgaaataagtgtttttgatgtgtttatttgagctcaactgtggga 28970224  T
Q  201 agagaaaacgatgtagccttgtaggttggtggggcctatgt 241  Q
    |||||||| ||||||||||||| |||||||||  |||||||    
T  28970225 agagaaaaggatgtagccttgttggttggtggtccctatgt 28970265  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 24992002 - 24991946
Alignment:
Q  12 tagtgatttgttaatggagtatggtgggccgatctcttttgcttcgagattgggagt 68  Q
    ||||||||||||  |||| ||||||||||||| | |||||| |||||||| ||||||    
T  24992002 tagtgatttgtttttggattatggtgggccgaccgcttttgattcgagatagggagt 24991946  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 110
Target Start/End: Complemental strand, 9239282 - 9239185
Alignment:
Q  15 tgatttgttaatggagtatggtgggccgatctcttttgcttcgagattgggagttaatt--tatagactaaagtcagttgaacttgttatggtgtctt 110  Q
    |||||||||  ||||||| ||||||||||||  |||||||||||||| |||||| | ||  | ||||||||||| | |||  ||||||||||||||||    
T  9239282 tgatttgtttttggagtacggtgggccgatcgtttttgcttcgagatcgggagtcagtttctctagactaaagttatttgggcttgttatggtgtctt 9239185  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 191
Target Start/End: Complemental strand, 9238927 - 9238870
Alignment:
Q  134 gtggtgtaatccaaatgagtattgaaataagtgtttttgaggtgtttatttgagctca 191  Q
    |||||| |||||||||| || |||||||||||||||||  ||||||||||| ||||||    
T  9238927 gtggtggaatccaaatgtgtgttgaaataagtgttttttcggtgtttattttagctca 9238870  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 34105400 - 34105463
Alignment:
Q  5 ggtgccatagtgatttgttaatggagtatggtgggccgatctcttttgcttcgagattgggagt 68  Q
    |||||| ||||||||||||  | |||| ||||||||||||| |||||| |||||||| ||||||    
T  34105400 ggtgccttagtgatttgtttctagagtttggtgggccgatcacttttgattcgagatcgggagt 34105463  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 112
Target Start/End: Original strand, 3985441 - 3985546
Alignment:
Q  6 gtgccatagtgatttgttaatggagtatggtgggccgatctcttttgcttcgagattgggagttaatttatagactaaagtcagttgaacttgttatggt 105  Q
    ||||| |||||||||| | ||||||| || |||| ||||| ||||||||| ||||||| || | || || ||||||||||||| |||  |||||| ||||    
T  3985441 gtgccttagtgatttgcttatggagtttgatggggcgatcacttttgctttgagattgagaatcaagttctagactaaagtcaattgggcttgtt-tggt 3985539  T
Q  106 gtcttct 112  Q
    |||||||    
T  3985540 gtcttct 3985546  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 12470042 - 12470101
Alignment:
Q  9 ccatagtgatttgttaatggagtatggtgggccgatctcttttgcttcgagattgggagt 68  Q
    |||||| |||||||| ||||||| ||||| ||| |||  |||||||||||||||||||||    
T  12470042 ccatagggatttgtttatggagtctggtgtgccaatcaattttgcttcgagattgggagt 12470101  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 12470611 - 12470670
Alignment:
Q  9 ccatagtgatttgttaatggagtatggtgggccgatctcttttgcttcgagattgggagt 68  Q
    |||||| |||||||| ||||||| ||||| ||| |||  |||||||||||||||||||||    
T  12470611 ccatagggatttgtttatggagtctggtgtgccaatcaattttgcttcgagattgggagt 12470670  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 70
Target Start/End: Original strand, 26474830 - 26474888
Alignment:
Q  12 tagtgatttgttaatggagtatggtgggccgatctcttttgcttcgagattgggagtta 70  Q
    ||||||||||||  |||||| ||||||||||||| |||||| |||||||| | ||||||    
T  26474830 tagtgatttgtttttggagtttggtgggccgatcacttttgattcgagatcgagagtta 26474888  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 12489812 - 12489872
Alignment:
Q  10 catagtgatttgttaatggagtatggtgggccgatctcttttgcttcgagattgggagtta 70  Q
    ||||| |||||||| ||||||| | ||| ||| |||  |||||||||||||||||||||||    
T  12489812 catagggatttgtttatggagtctagtgtgccaatcaattttgcttcgagattgggagtta 12489872  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 32876720 - 32876657
Alignment:
Q  5 ggtgccatagtgatttgttaatggagtatggtgggccgatctcttttgcttcgagattgggagt 68  Q
    |||||| |||||||||||| ||||||||||||||| |||   |||||| |||||||| ||||||    
T  32876720 ggtgccttagtgatttgtttatggagtatggtgggtcgacgacttttgattcgagatcgggagt 32876657  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 204
Target Start/End: Original strand, 51080182 - 51080245
Alignment:
Q  141 aatccaaatgagtattgaaataagtgtttttgaggtgtttatttgagctcaactgtgggaagag 204  Q
    |||| ||| |||| ||||||||||||||||| |  ||||||||||||||||| ||||| |||||    
T  51080182 aatctaaacgagtgttgaaataagtgtttttcatatgtttatttgagctcaattgtggaaagag 51080245  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 207
Target Start/End: Complemental strand, 27335300 - 27335251
Alignment:
Q  158 aaataagtgtttttgaggtgtttatttgagctcaactgtgggaagagaaa 207  Q
    |||||| | ||||| || ||||||||||||||||| ||||||||||||||    
T  27335300 aaataaatatttttcagctgtttatttgagctcaattgtgggaagagaaa 27335251  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 185
Target Start/End: Complemental strand, 13964047 - 13963994
Alignment:
Q  132 tggtggtgtaatccaaatgagtattgaaataagtgtttttgaggtgtttatttg 185  Q
    |||||||| ||||||||||||| |||||||| ||||| ||  ||||||||||||    
T  13964047 tggtggtggaatccaaatgagtgttgaaatatgtgttattcgggtgtttatttg 13963994  T

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Target: scaffold0157 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 30665 - 30605
Alignment:
Q  10 catagtgatttgttaatggagtatggtgggccgatctcttttgcttcgagattgggagtta 70  Q
    ||||| |||||||| ||||||| | ||| ||| |||  |||||||||||||||||||||||    
T  30665 catagggatttgtttatggagtctagtgtgccaatcaattttgcttcgagattgggagtta 30605  T

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