View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19165_high_27 (Length: 207)
Name: NF19165_high_27
Description: NF19165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19165_high_27 |
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Alignment Details
Target: chr6 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 14 - 188
Target Start/End: Complemental strand, 24276813 - 24276639
Alignment:
| Q |
14 |
caaaggagatgaatgagttgaacttgattcgatgtcagaaaattcccaagagaccaggttgtgattggcgtgatcttccagaggaaaaggtaaactgaaa |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24276813 |
caaaggagatgaatgagttgaacttgattcgatgtcagaaaattcccaagagaccaggttgtgattggcgtgatcttccagaggaaaaggtaaactgaaa |
24276714 |
T |
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| Q |
114 |
tctttgtgaattttagcatgacattctttgtgttgttgttaatctaattaatgttatcaaatataatgctcagat |
188 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
24276713 |
tctttgtgaattttagcatgacattctttgtgttgttgttaatctaattaatgttatcaaatataatgcacagat |
24276639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 14 - 181
Target Start/End: Complemental strand, 8048345 - 8048179
Alignment:
| Q |
14 |
caaaggagatgaatgagttgaacttgattcgatgtcagaaaattcccaagagaccaggttgtgattggcgtgatcttccagaggaaaaggtaaactgaaa |
113 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
8048345 |
caaaggagatgaatgagttgaacttgattcgttgtcagaaaattcccaagagaccaggttgtgattggcgtgatcttccagatgaaaaggtaaactgaaa |
8048246 |
T |
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| Q |
114 |
tctttgtgaattttagcatgacattctttgtgttgttgttaatctaattaatgttatcaaatataatg |
181 |
Q |
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| T |
8048245 |
tctttgtgaattttagcatgacattttttttg-tgctgttaatctaattgatgttatcaaatataatg |
8048179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 129; Significance: 6e-67; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 14 - 188
Target Start/End: Complemental strand, 20159970 - 20159799
Alignment:
| Q |
14 |
caaaggagatgaatgagttgaacttgattcgatgtcagaaaattcccaagagaccaggttgtgattggcgtgatcttccagaggaaaaggtaaactgaaa |
113 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
20159970 |
caaaagagatgaatgagttgaacttgattcgatgtcagaaaattcccaagagaccaggttgtgattggcgcgatcttccagatgaaaaggtaaactgaaa |
20159871 |
T |
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| Q |
114 |
tctttgtgaattttagcatgacattctttgtgttgttgttaatctaattaatgttatcaaatataatgctcagat |
188 |
Q |
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||||||||||||||||||||||||| ||||||| ||||||||||||||| ||| || |||||||||| ||||| |
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| T |
20159870 |
tctttgtgaattttagcatgacattttttgtgt---tgttaatctaattaacgttgtcgaatataatgcacagat |
20159799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 128; Significance: 2e-66; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 14 - 188
Target Start/End: Original strand, 12042428 - 12042600
Alignment:
| Q |
14 |
caaaggagatgaatgagttgaacttgattcgatgtcagaaaattcccaagagaccaggttgtgattggcgtgatcttccagaggaaaaggtaaactgaaa |
113 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
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| T |
12042428 |
caaaggagatgaatgagttgaatttgattcgatgtcagaaaattcccaagagaccaggctgtgattggcgtgatcttccagatgaaaaggtaaactgaaa |
12042527 |
T |
|
| Q |
114 |
tctttgtgaattttagcatgacattctttgtgttgttgttaatctaattaatgttatcaaatataatgctcagat |
188 |
Q |
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||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||| |
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| T |
12042528 |
tctttgtgatttttagcatgacattttttgtacg--tgttaatctaattaatgttatcaaatataatgcacagat |
12042600 |
T |
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