View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19165_high_4 (Length: 548)
Name: NF19165_high_4
Description: NF19165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19165_high_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 1 - 538
Target Start/End: Complemental strand, 43479298 - 43478760
Alignment:
| Q |
1 |
ccaacaaatcataacgggtccttcagagtatccaaatgtcagattaaatcagtggcttcgattgaacctcgaaaaacagttctgaacaaacaaaaggtct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43479298 |
ccaacaaatcataacgggtccttcagagtatctaaatgtcagattgaatcagtggcctcgattgaacctcgaaaaacagttctgaacaaacaaaaggtct |
43479199 |
T |
|
| Q |
101 |
aagcaataaagtgtttgaatagcatttacgcattaaatactgagaggataaacgaccaactctccgacaagggaatcaaacaacctaatcactaacggtc |
200 |
Q |
| |
|
| ||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
43479198 |
aggcaataaagtgtttgaatagcatttacacattaaatgctgagaggataaacgatcaactctccgacaagggaatcaaacaacataatcactaacggtc |
43479099 |
T |
|
| Q |
201 |
caattgaggtgagcacacaccaaaaattcatctcgagcattcctctaactaacaagggtaactccgagaattgttcattacgagcatacccattccatca |
300 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43479098 |
caattgacgtgagcacacaccaaaaattcatctcgagcattcctctaactaacaagggtacctccgagaattgttcattacgagcatacccattccatca |
43478999 |
T |
|
| Q |
301 |
gatccaacgagcatttcactcatcactctttaaccccttacgagcataaggttcatccaaacaagaactgccttgctcaaagtcatcaccccttttcaag |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||| |
|
|
| T |
43478998 |
gatccaacgagcatttcactcatcactctttaaccccttacgagcataaggttcatccaaacacgaactgccttgctcaaagtcatcactcattttcaat |
43478899 |
T |
|
| Q |
401 |
agtaacgacttg-ggggctactgttattgactgataaaaagcataagacccatttctgtggacccaatcagaccaagcccgatcttatttgcaacacacc |
499 |
Q |
| |
|
|||||||||||| |||||||||||| | ||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
43478898 |
agtaacgacttggggggctactgttctggaccgataaaaagcataagacccatttatgtggacccaatcagaacaagcccgatcttatttgcaacacacc |
43478799 |
T |
|
| Q |
500 |
ccctccctgcgggcgggggtttactctaacgtctctgtg |
538 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
43478798 |
ccctccctgcaggcgggggtttactctaacgtctctgtg |
43478760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University