View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19165_high_9 (Length: 439)
Name: NF19165_high_9
Description: NF19165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19165_high_9 |
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| [»] chr4 (13 HSPs) |
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| [»] scaffold0454 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 13)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 18 - 439
Target Start/End: Complemental strand, 5565788 - 5565367
Alignment:
| Q |
18 |
caattacattagtttcaacgttttctttccttctctacttcatatatatgagtttccagatatctgttgcctcggctaaatgtcttgaggatcaacaatc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5565788 |
caattacattagtttcaacgttttctttccttctctacttcatatatatgagtttccagatatctgttgcctcggctaaatgtcttgaggatcaacaatc |
5565689 |
T |
|
| Q |
118 |
attcttgctccaatttaaaaacaatctcacattctcaccagacagttttaacaaactggaacagtggaatcaaagcattccttgctgcaattggagtggt |
217 |
Q |
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||| ||||||||| |||||||||||||||||||| | ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
5565688 |
attattgctccaaattaaaaacaatctcacattcgaagcagacagttttaataaactggagcagtggaatcaaagcattccttgctgcaattggagtggt |
5565589 |
T |
|
| Q |
218 |
gtaacctgtgataacaaggggcaagttataggccttgacctgagaaacgaagtatccggtggatttgacaattccagtggtcttttcagtattcaaaagt |
317 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5565588 |
gtaacctgtgataacgaggggcaagttataggccttgacctgagaaacgaagtatccggtggatttgacaattccagtggtcttttcagtattcaaaagt |
5565489 |
T |
|
| Q |
318 |
tgactaagattaggatgttatatctagatggtataagtataccagcccaaggatatgaatggagcagtcttttgttgccgttccgtgacctacaggaatt |
417 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
5565488 |
tgaccaagattaggatgttatatctagatggtataagtataccatctcaaggatatgaatggagcagtcttttgttgccgttccgtgacctacaagaatt |
5565389 |
T |
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| Q |
418 |
aggcatgtcaagctgtggtctt |
439 |
Q |
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|||||||||||||||||||||| |
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| T |
5565388 |
aggcatgtcaagctgtggtctt |
5565367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 18 - 436
Target Start/End: Complemental strand, 5606106 - 5605688
Alignment:
| Q |
18 |
caattacattagtttcaacgttttctttccttctctacttcatatatatgagtttccagatatctgttgcctcggctaaatgtcttgaggatcaacaatc |
117 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5606106 |
caattacattagtttcaatgttttctttccttctctacttcatatatatgagtttccagatatctgttgcctcggctaaatgtcttgaggatcaacaatc |
5606007 |
T |
|
| Q |
118 |
attcttgctccaatttaaaaacaatctcacattctcaccagacagttttaacaaactggaacagtggaatcaaagcattccttgctgcaattggagtggt |
217 |
Q |
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||| ||||||||| |||||||||||||||||||| | |||| ||||||| |||||||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
5606006 |
attattgctccaaattaaaaacaatctcacattcgaagcagattgttttaataaactggagcagtggaatcaaagcattccttgctgcaattggcatggt |
5605907 |
T |
|
| Q |
218 |
gtaacctgtgataacaaggggcaagttataggccttgacctgagaaacgaagtatccggtggatttgacaattccagtggtcttttcagtattcaaaagt |
317 |
Q |
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|
||||||||||||||| || ||||||||||||||||||||| || | || ||| ||||||||||||||||||| ||||||||||||| |||| |||| |
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| T |
5605906 |
gtaacctgtgataacgagaggcaagttataggccttgaccagactagacaaatatatggtggatttgacaattccactggtcttttcagtcttcagaagt |
5605807 |
T |
|
| Q |
318 |
tgactaagattaggatgttatatctagatggtataagtataccagcccaaggatatgaatggagcagtcttttgttgccgttccgtgacctacaggaatt |
417 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |
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| T |
5605806 |
tgaccaagattaggatgttatatctagatggtataagtataccagctcaaggatatgaatggagcagtcttttgttgccgctccgtgacctacaagaatt |
5605707 |
T |
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| Q |
418 |
aggcatgtcaagctgtggt |
436 |
Q |
| |
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||| |||||| ||||||| |
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| T |
5605706 |
aggtatgtcagactgtggt |
5605688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 58 - 219
Target Start/End: Complemental strand, 3750137 - 3749976
Alignment:
| Q |
58 |
catatatatgagtttccagatatctgttgcctcggctaaatgtcttgaggatcaacaatcattcttgctccaatttaaaaacaatctcacattctcacca |
157 |
Q |
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||||||| | |||||||| || | |||| |||| || |||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||| |||| |
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| T |
3750137 |
catatatctcagtttccaaatctttgttacctctgccaaatgtcttgaggatcaacaatcattgttgcttcaattaaaaaacaatctcacattc-aacca |
3750039 |
T |
|
| Q |
158 |
-gacagttttaacaaactggaacagtggaatcaaagcattccttgctgcaattggagtggtgt |
219 |
Q |
| |
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|| |||| | |||||| ||| ||||||| |||||||| |||||||||||||||||||||| |
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| T |
3750038 |
tgaaagttccaccaaactagaattgtggaataaaagcattgcttgctgcaattggagtggtgt |
3749976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 97 - 258
Target Start/End: Original strand, 5894265 - 5894426
Alignment:
| Q |
97 |
atgtcttgaggatcaacaatcattcttgctccaatttaaaaacaatctcacattctca-ccagacagttttaacaaactggaacagtggaatcaaagcat |
195 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| ||| || || ||| || |||||| | ||||||| ||| || |
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| T |
5894265 |
atgtcttgaggatcaacaatcattgttgctccaattcaaaaaaaatctcacatt-tcatcctgaaggttctaccaaactaatattgtggaataaaaccac |
5894363 |
T |
|
| Q |
196 |
tccttgctgcaattggagtggtgtaacctgtgataacaaggggcaagttataggccttgacct |
258 |
Q |
| |
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| ||||||||||||||||||||||||| ||||| || |||| || ||||| ||||||||||| |
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| T |
5894364 |
tgcttgctgcaattggagtggtgtaacttgtgacaatgagggacatgttattggccttgacct |
5894426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 95 - 150
Target Start/End: Original strand, 5847272 - 5847327
Alignment:
| Q |
95 |
aaatgtcttgaggatcaacaatcattcttgctccaatttaaaaacaatctcacatt |
150 |
Q |
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|||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
5847272 |
aaatgtcttgaggatcaacaatcatttttgatccaatttaaaaacaatctcacatt |
5847327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 70 - 149
Target Start/End: Original strand, 5885342 - 5885421
Alignment:
| Q |
70 |
tttccagatatctgttgcctcggctaaatgtcttgaggatcaacaatcattcttgctccaatttaaaaacaatctcacat |
149 |
Q |
| |
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|||||||| ||| ||||||| || |||||||||||||||||||||||| | ||||||||||| |||||||||||||||| |
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| T |
5885342 |
tttccagaactctcttgcctctgccaaatgtcttgaggatcaacaatcactgttgctccaattaaaaaacaatctcacat |
5885421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 52 - 149
Target Start/End: Original strand, 5570133 - 5570230
Alignment:
| Q |
52 |
ctacttcatatatatgagtttccagatatctgttgcctcggctaaatgtcttgaggatcaacaatcattcttgctccaatttaaaaacaatctcacat |
149 |
Q |
| |
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||||| ||||||| | | |||||| || |||||||||| || ||||||||||||||||||||||| || ||||||||| | ||||| |||||||||| |
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| T |
5570133 |
ctactgcatatatctcactttccaaatcactgttgcctcagccaaatgtcttgaggatcaacaatcgttgttgctccaactaaaaaataatctcacat |
5570230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 95 - 151
Target Start/End: Complemental strand, 5560157 - 5560101
Alignment:
| Q |
95 |
aaatgtcttgaggatcaacaatcattcttgctccaatttaaaaacaatctcacattc |
151 |
Q |
| |
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|||||||||||||||||||||||||| |||| ||||| |||||||||||||||||| |
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|
| T |
5560157 |
aaatgtcttgaggatcaacaatcattgttgcatcaattaaaaaacaatctcacattc |
5560101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 222
Target Start/End: Original strand, 6030818 - 6030858
Alignment:
| Q |
182 |
tggaatcaaagcattccttgctgcaattggagtggtgtaac |
222 |
Q |
| |
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|||||||||| ||||||||||||||||||||| |||||||| |
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| T |
6030818 |
tggaatcaaaacattccttgctgcaattggagcggtgtaac |
6030858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 5859126 - 5859079
Alignment:
| Q |
181 |
gtggaatcaaagcattccttgctgcaattggagtggtgtaacctgtga |
228 |
Q |
| |
|
|||||||||||||||| | |||||||| |||||||||||||| ||||| |
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| T |
5859126 |
gtggaatcaaagcattgcatgctgcaactggagtggtgtaacttgtga |
5859079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 182 - 228
Target Start/End: Complemental strand, 5554270 - 5554224
Alignment:
| Q |
182 |
tggaatcaaagcattccttgctgcaattggagtggtgtaacctgtga |
228 |
Q |
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|||||||||||||| |||||||||||||||| |||||||| ||||| |
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| T |
5554270 |
tggaatcaaagcatagcttgctgcaattggagcggtgtaacttgtga |
5554224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 307
Target Start/End: Complemental strand, 5560071 - 5559942
Alignment:
| Q |
181 |
gtggaatcaaagcattccttgctgcaattggagtggtgtaacctgtgataacaaggggcaagttataggccttgacctgagaaacgaag-tatcc--ggt |
277 |
Q |
| |
|
|||||||||||||| | |||||||||||||||| ||||| || ||||| | |||| || ||||| ||||||||||| || |||||| ||||| ||| |
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| T |
5560071 |
gtggaatcaaagcactgcttgctgcaattggaggggtgttacatgtgacattgagggacatgttattggccttgaccttagtgacgaagatatccatggt |
5559972 |
T |
|
| Q |
278 |
ggatttgacaattccagtggtcttttcagt |
307 |
Q |
| |
|
|||||| || |||| || ||||||||||| |
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| T |
5559971 |
ggatttaacgattcaagcagtcttttcagt |
5559942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 261
Target Start/End: Complemental strand, 5614153 - 5614073
Alignment:
| Q |
181 |
gtggaatcaaagcattccttgctgcaattggagtggtgtaacctgtgataacaaggggcaagttataggccttgacctgag |
261 |
Q |
| |
|
||||||| |||||||| | ||||||||||||||||| || || ||||| ||| |||| | |||| |||||||||||||| |
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|
| T |
5614153 |
gtggaataaaagcattgcatgctgcaattggagtggcgttacttgtgacaacgagggatatattattggccttgacctgag |
5614073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 95 - 150
Target Start/End: Complemental strand, 1486397 - 1486342
Alignment:
| Q |
95 |
aaatgtcttgaggatcaacaatcattcttgctccaatttaaaaacaatctcacatt |
150 |
Q |
| |
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|||||||||||||||||||| ||||| |||||||| || ||||||||||||||||| |
|
|
| T |
1486397 |
aaatgtcttgaggatcaacactcattgttgctccagttaaaaaacaatctcacatt |
1486342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 150
Target Start/End: Complemental strand, 23268578 - 23268515
Alignment:
| Q |
87 |
cctcggctaaatgtcttgaggatcaacaatcattcttgctccaatttaaaaacaatctcacatt |
150 |
Q |
| |
|
|||| |||||||||||||||||||||| | | | ||||| ||||| ||||||||||||||||| |
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|
| T |
23268578 |
cctctgctaaatgtcttgaggatcaacgaactctgttgcttcaattaaaaaacaatctcacatt |
23268515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0454 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0454
Description:
Target: scaffold0454; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 150
Target Start/End: Complemental strand, 1584 - 1528
Alignment:
| Q |
95 |
aaatgtcttgaggatcaacaatcattcttgctccaatt-taaaaacaatctcacatt |
150 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||| || ||||||||||||||||| |
|
|
| T |
1584 |
aaatgtcttgaggatcaacactcattgttgctccagttaaaaaaacaatctcacatt |
1528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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