View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19165_low_11 (Length: 376)

Name: NF19165_low_11
Description: NF19165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19165_low_11
NF19165_low_11
[»] chr3 (1 HSPs)
chr3 (1-360)||(28969571-28969929)
[»] chr5 (3 HSPs)
chr5 (140-327)||(20424895-20425088)
chr5 (142-196)||(12402286-12402340)
chr5 (264-314)||(12402162-12402212)
[»] chr8 (4 HSPs)
chr8 (142-314)||(10866038-10866216)
chr8 (52-250)||(12737187-12737386)
chr8 (76-327)||(18188977-18189232)
chr8 (253-315)||(275882-275944)
[»] chr1 (4 HSPs)
chr1 (142-328)||(43805191-43805377)
chr1 (142-196)||(31288743-31288797)
chr1 (253-328)||(21514839-21514914)
chr1 (76-196)||(20424961-20425082)
[»] scaffold0604 (1 HSPs)
scaffold0604 (62-250)||(4241-4429)
[»] chr6 (2 HSPs)
chr6 (253-315)||(1042855-1042917)
chr6 (159-249)||(1882974-1883064)
[»] chr4 (1 HSPs)
chr4 (142-194)||(21408497-21408549)


Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 28969929 - 28969571
Alignment:
Q  1 gcagttaaggtacaatcaatacaggttgaagtggtgacnnnnnnnnnntgaagatcaatagagcaactaagttcttgatatgtgtatcgttcgtcattgg 100  Q
    ||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28969929 gcagttaaggtacaatcaatacaggttgaagtggtgacaaaaaaaaa-tgaagatcaatagagcaactaagttcttgatatgtgtatcgttcgtcattgg 28969831  T
Q  101 agtgacgtcatgatagacttggactatattcaagtttcacatcttggtatggtttgagttcttccaatgtcgttgttactaaagatgtcttaaatcacaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28969830 agtgacgtcatgatagacttggactatattcaagtttcacatcttggtatggtttgagttcttccaatgtcgttgttactaaagatgtcttaaatcacaa 28969731  T
Q  201 cgttagtcatgatttggagattttacgatcgtattggaaaggcaatgatgtcagtgagccttaggtttataccaatgagaaagaaagagcggcaactatc 300  Q
    ||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  28969730 cgtaagtcatgatttggagattttacgatcgtattggaaagggaatgatgtcaatgagccttaggtttataccaatgaggaagaaagagcggcaactatc 28969631  T
Q  301 aactactttaagaattgttctgctgctagagaaaacctattcattgatgtgtccaagatt 360  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28969630 aactactttaagaattgttctgctgctagagaaaacctattcattgatgtgtccaagatt 28969571  T

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Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 140 - 327
Target Start/End: Original strand, 20424895 - 20425088
Alignment:
Q  140 catcttggtatggtttgagttcttccaatgtcgttgttactaaagatgtcttaaatcacaacgttagtcatgatttggagattttacgatcgtattggaa 239  Q
    ||||||||||||||||  |||||||||||||| | ||| ||||||| || |||||||  ||| ||  |||||||||||||||||| ||| | |||| |||    
T  20424895 catcttggtatggtttaggttcttccaatgtcatggtttctaaagaggttttaaatcctaacattgctcatgatttggagattttgcgaccatatttgaa 20424994  T
Q  240 aggcaatga------tgtcagtgagccttaggtttataccaatgagaaagaaagagcggcaactatcaactactttaagaattgttctgctgct 327  Q
    |||||||||      ||  |||| |||| ||||||||||  ||||| ||||||||| |||| ||||||||||||| |||||  |||||| ||||    
T  20424995 aggcaatgatgcttgtgcaagtgtgcctcaggtttatactgatgaggaagaaagagaggcagctatcaactacttgaagaaccgttctgttgct 20425088  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 142 - 196
Target Start/End: Complemental strand, 12402340 - 12402286
Alignment:
Q  142 tcttggtatggtttgagttcttccaatgtcgttgttactaaagatgtcttaaatc 196  Q
    |||||||||||||||||||||||||||||| | ||| |||||||||| |||||||    
T  12402340 tcttggtatggtttgagttcttccaatgtcatggtttctaaagatgttttaaatc 12402286  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 314
Target Start/End: Complemental strand, 12402212 - 12402162
Alignment:
Q  264 ggtttataccaatgagaaagaaagagcggcaactatcaactactttaagaa 314  Q
    ||||||||| |||||| ||||||||| |||| ||||||||||||| |||||    
T  12402212 ggtttatactaatgaggaagaaagagaggcagctatcaactacttgaagaa 12402162  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 142 - 314
Target Start/End: Original strand, 10866038 - 10866216
Alignment:
Q  142 tcttggtatggtttgagttcttccaatgtcgttgttactaaagatgtcttaaatcacaacgttagtcatgatttggagattttacgatcgtattggaaag 241  Q
    |||||||||||||||||||||||||||||| | |||||||||||||| |||||||  ||| |    ||||| ||||| ||||| ||  | |||  |||||    
T  10866038 tcttggtatggtttgagttcttccaatgtcatggttactaaagatgttttaaatcctaacatcgcccatgacttggaaattttgcggccttatctgaaag 10866137  T
Q  242 gcaatgatgt------cagtgagccttaggtttataccaatgagaaagaaagagcggcaactatcaactactttaagaa 314  Q
     |||||||||       |||||||||  |||||||||  ||||| ||||||||| |||||||||||||||||| |||||    
T  10866138 acaatgatgtttgtgcaagtgagcctcgggtttatactgatgaggaagaaagagaggcaactatcaactacttgaagaa 10866216  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 52 - 250
Target Start/End: Original strand, 12737187 - 12737386
Alignment:
Q  52 agatcaatagagcaactaagttcttgatatgtgtatcgttcgtcattggagtgacgtcatgatagacttggactatattcaagtttcac-atcttggtat 150  Q
    ||||||| | |||||| || ||| ||||||| | |||||| ||| ||||||||||||  |||  ||||| || |||||||||| | | | ||||||||||    
T  12737187 agatcaacaaagcaacgaacttcctgatatgcgcatcgttggtccttggagtgacgttgtgacggacttagattatattcaagatcccccatcttggtat 12737286  T
Q  151 ggtttgagttcttccaatgtcgttgttactaaagatgtcttaaatcacaacgttagtcatgatttggagattttacgatcgtattggaaaggcaatgatg 250  Q
    |||||  |||||||||||||| | ||| |||||||||| |||||||  |||| |  |||||| |||||||||||  |  | |||| ||||||||||||||    
T  12737287 ggtttatgttcttccaatgtcatggtttctaaagatgttttaaatcttaacggtgttcatgacttggagattttgtggccatatttgaaaggcaatgatg 12737386  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 76 - 327
Target Start/End: Complemental strand, 18189232 - 18188977
Alignment:
Q  76 tgatatgtgtatcgttcgtcattggagtgacgtcatgatagacttggactatattcaagtttcacatcttggtatggtttgagttcttccaatgtcgttg 175  Q
    ||||||| | |||||| ||| |||||||||||   ||| |||||| ||||||| |||||   | || |||||||||||||  ||||||| |||||| | |    
T  18189232 tgatatgcggatcgttggtccttggagtgacgctgtgacagacttagactataatcaaga--cccaacttggtatggtttaggttcttctaatgtcatgg 18189135  T
Q  176 ttactaaagatgtcttaaatcacaacgttagtcatgatttggagattttacgatcgtattggaaaggcaatgatgtc------agtgagccttaggttta 269  Q
    || ||||||| ||  ||||||  ||| ||  ||||||  |||||||||| ||| | |||| |||||||||| |||        |||| ||||  ||||||    
T  18189134 tttctaaagaggttctaaatcctaacattgctcatgacctggagattttgcgaccatatttgaaaggcaataatgcttgtacaagtgtgcctcgggttta 18189035  T
Q  270 taccaatgagaaagaaagagcggcaactatcaactactttaagaattgttctgctgct 327  Q
    | |  ||||| |||||||||||||| ||||||||||||| |||||  |||||| ||||    
T  18189034 ttctgatgaggaagaaagagcggcagctatcaactacttgaagaaccgttctgttgct 18188977  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 315
Target Start/End: Complemental strand, 275944 - 275882
Alignment:
Q  253 agtgagccttaggtttataccaatgagaaagaaagagcggcaactatcaactactttaagaat 315  Q
    |||||||||| ||||||||   ||||| ||||||||| |||| ||||||||||||| ||||||    
T  275944 agtgagccttgggtttatattgatgaggaagaaagaggggcagctatcaactacttgaagaat 275882  T

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Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 142 - 328
Target Start/End: Complemental strand, 43805377 - 43805191
Alignment:
Q  142 tcttggtatggtttgagttcttccaatgtcgttgttactaaagatgtcttaaatcacaacgttagtcatgatttggagattttacgatcgtattggaaag 241  Q
    |||||||||||||||||||||||||||||| |||||||  ||||||| ||||| | |||| |   |||||| ||||||||||| ||  | ||||  ||||    
T  43805377 tcttggtatggtttgagttcttccaatgtcattgttacccaagatgttttaaaccccaacatcgctcatgacttggagattttgcggccatatttaaaag 43805278  T
Q  242 gcaatgatgtcagtgagccttaggtttataccaatgagaaagaaagagcggcaactatcaactactttaagaattgttctgctgcta 328  Q
     ||| | ||  |||||||||  |||||||||  ||| | ||||||||| ||||  |||||||||||| ||||| || |||| |||||    
T  43805277 acaaaggtgcaagtgagcctcgggtttatactgatggggaagaaagagaggcagttatcaactacttgaagaactgctctgttgcta 43805191  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 142 - 196
Target Start/End: Complemental strand, 31288797 - 31288743
Alignment:
Q  142 tcttggtatggtttgagttcttccaatgtcgttgttactaaagatgtcttaaatc 196  Q
    |||||||||||||||||||||||||||||| | |||||||||||||| |||||||    
T  31288797 tcttggtatggtttgagttcttccaatgtcatggttactaaagatgttttaaatc 31288743  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 253 - 328
Target Start/End: Original strand, 21514839 - 21514914
Alignment:
Q  253 agtgagccttaggtttataccaatgagaaagaaagagcggcaactatcaactactttaagaattgttctgctgcta 328  Q
    |||| |||| ||||||||||| | ||| ||||||||||| ||||||| || || || |||||||||||||||||||    
T  21514839 agtgtgcctcaggtttataccgacgaggaagaaagagcgacaactataaattatttaaagaattgttctgctgcta 21514914  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 76 - 196
Target Start/End: Original strand, 20424961 - 20425082
Alignment:
Q  76 tgatatgtgtatcgttcgtcattggagtgacgtcatgatagacttggactatattcaagtttcac-atcttggtatggtttgagttcttccaatgtcgtt 174  Q
    ||||||| | |||||| ||| ||||||||| ||| | | |||||||||||||||||||| | ||| || ||||| ||||||    ||||||||||||| |    
T  20424961 tgatatgcgcatcgttggtccttggagtgatgtcgtaacagacttggactatattcaagatccactatattggtgtggtttagaatcttccaatgtcgat 20425060  T
Q  175 gttactaaagatgtcttaaatc 196  Q
    ||| ||||||| || |||||||    
T  20425061 gtttctaaagaggttttaaatc 20425082  T

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Target: scaffold0604 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0604
Description:

Target: scaffold0604; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 62 - 250
Target Start/End: Original strand, 4241 - 4429
Alignment:
Q  62 agcaactaagttcttgatatgtgtatcgttcgtcattggagtgacgtcatgatagacttggactatattcaagtttcac-atcttggtatggtttgagtt 160  Q
    |||||| || ||| ||||||| | |||||| ||  ||||||||||||  ||||| |||| || |||| ||||| ||| | |||||||||||||||  |||    
T  4241 agcaacgaatttcctgatatgcgcatcgttggtacttggagtgacgttgtgataaacttagattataatcaagattccccatcttggtatggtttaggtt 4340  T
Q  161 cttccaatgtcgttgttactaaagatgtcttaaatcacaacgttagtcatgatttggagattttacgatcgtattggaaaggcaatgatg 250  Q
    ||||||||||| | ||| ||||||| || |||||||  ||| ||  |||||| ||||||||||| ||  | |||| ||||||||||||||    
T  4341 cttccaatgtcatggtttctaaagaggttttaaatcctaacattgatcatgacttggagattttgcggccatatt-gaaaggcaatgatg 4429  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 315
Target Start/End: Complemental strand, 1042917 - 1042855
Alignment:
Q  253 agtgagccttaggtttataccaatgagaaagaaagagcggcaactatcaactactttaagaat 315  Q
    |||||||||  ||||||||| |||||| ||||||||| ||||| |||||||||||| ||||||    
T  1042917 agtgagcctcgggtttatacaaatgaggaagaaagagaggcaattatcaactacttgaagaat 1042855  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 249
Target Start/End: Original strand, 1882974 - 1883064
Alignment:
Q  159 ttcttccaatgtcgttgttactaaagatgtcttaaatcacaacgttagtcatgatttggagattttacgatcgtattggaaaggcaatgat 249  Q
    ||||||||||||| ||||||||||| ||||||||||||  || || | |||||| ||  |||||||   |||||||||||| |||||||||    
T  1882974 ttcttccaatgtcattgttactaaatatgtcttaaatcctaatgtcactcatgacttttagattttttaatcgtattggaagggcaatgat 1883064  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 194
Target Start/End: Original strand, 21408497 - 21408549
Alignment:
Q  142 tcttggtatggtttgagttcttccaatgtcgttgttactaaagatgtcttaaa 194  Q
    |||||||||||||| |||||||| |||||| | ||| |||||||||| |||||    
T  21408497 tcttggtatggtttaagttcttcaaatgtcatggtttctaaagatgttttaaa 21408549  T

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