View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19165_low_12 (Length: 372)

Name: NF19165_low_12
Description: NF19165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19165_low_12
NF19165_low_12
[»] chr2 (3 HSPs)
chr2 (11-357)||(1584448-1584793)
chr2 (137-357)||(1593216-1593435)
chr2 (12-143)||(1592280-1592411)


Alignment Details
Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 11 - 357
Target Start/End: Complemental strand, 1584793 - 1584448
Alignment:
Q  11 cagagacggacgcgtgtcacaggcttctgatgtcaataacttgcctgctcctggtgattctgttgatgagcagaaacaaaagtttgcagcaaaaggcctt 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  1584793 cagagacggacgcgtgtcacaggcttctgatgtcaataacttgcctgctcctggtgattctgttgatgagcagaaacaaaagtttgcaacaaaaggcctt 1584694  T
Q  111 aacactcaagaccttgtcacccttgttggtaagagatctaaatattttcaaaatttatttaccactttagaattacatattgaagttgcattcacattaa 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||| |||||| |||||||||    
T  1584693 aacactcaagaccttgtcacccttgttggtaagagatctaaatattttcgaaatttatttatcactctagaattacatattgatgttgca-tcacattaa 1584595  T
Q  211 ttaatattctatgaatatattataggtggacatacaattggtacaacagcatgtcaattcttcagcaacagattgagaaacttcactacaaatggtgcag 310  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1584594 ttaatattttatgaatatattataggtggacatacaattggtacaacagcatgtcaattcttcagcaacagattgagaaacttcactacaaatggtgcag 1584495  T
Q  311 ctgatccttcaatagacccttcatttctttcacaattacaaacactt 357  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  1584494 ctgatccttcaatagacccttcatttctttcacaattacaaacactt 1584448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 137 - 357
Target Start/End: Original strand, 1593216 - 1593435
Alignment:
Q  137 tggtaagagatctaaatattttcaaaatttatttaccactttagaattacatattgaagttgcattcacattaattaatattctatgaatatattatagg 236  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||    
T  1593216 tggtaagagatctaaatattttcaaaatttatttatcactctagaattacatattgatgttgcat-cacattaattaatattttatgaatatattatagg 1593314  T
Q  237 tggacatacaattggtacaacagcatgtcaattcttcagcaacagattgagaaacttcactacaaatggtgcagctgatccttcaatagacccttcattt 336  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  1593315 tggacatacaattggtacaacagcatgtcaattcttcagcaacagattgagaaactttactacaaatggtgcagctgatccttcaatagacccttcattt 1593414  T
Q  337 ctttcacaattacaaacactt 357  Q
    |||||||||||||||||||||    
T  1593415 ctttcacaattacaaacactt 1593435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 12 - 143
Target Start/End: Original strand, 1592280 - 1592411
Alignment:
Q  12 agagacggacgcgtgtcacaggcttctgatgtcaataacttgcctgctcctggtgattctgttgatgagcagaaacaaaagtttgcagcaaaaggcctta 111  Q
    ||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||| |    
T  1592280 agagacggacgcgtgtcacaggcttctgacgtcaataacttgcccgctcctagtgattctgttgatgtgcagaaacaaaagtttgcagcaaaaggcctca 1592379  T
Q  112 acactcaagaccttgtcacccttgttggtaag 143  Q
    ||||||||||||||||||||||||||||||||    
T  1592380 acactcaagaccttgtcacccttgttggtaag 1592411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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