View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19165_low_15 (Length: 321)
Name: NF19165_low_15
Description: NF19165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19165_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 18 - 316
Target Start/End: Original strand, 6744163 - 6744460
Alignment:
| Q |
18 |
atttagaaggaataaaatatgcagcttgattattatttttatctggtaatgtgttttagatatattatgttct-ggattttcctctttgaaaggaataat |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
6744163 |
atttagaaggaataaaatatgcagcttgattattatttttatccggtaatttgttttagatatattatgttcttggattttcctctttgaaaggaataat |
6744262 |
T |
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| Q |
117 |
gtgaatctaaggcatagtttatttgatgcatatcagtccaatggtcaataatatcatgtttttgttgtttcaaaatcgagagaactgtgttgcaacacaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
6744263 |
gtgaatctaaggcatagtttatttgatgcatatcagtccaatggtcaataatatcatgttttggttgtttcaaaatcgagagaactgtgttgcaacacaa |
6744362 |
T |
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| Q |
217 |
gacaaagttgtgagtcactaaaaaatgttggagtgtaaaccatgatgttactcnnnnnnnnnctttctcccatgaactcatcattcgtttctctgctcct |
316 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||| |
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| T |
6744363 |
gacaaagttgtgagtcactataaaatgttggagtgtaaaccatgatgttactctatttttt--tttctcccatgaactcatcattcatttctctgttcct |
6744460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 316
Target Start/End: Original strand, 4433558 - 4433859
Alignment:
| Q |
18 |
atttagaaggaataaaatatgcagcttgattattatttttatctggtaatgtgttttagatatattatgttctggattttcctctttgaaaggaataatg |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
4433558 |
atttagaaggaataaaatatgcagcttgattattatttttatccggtaatttgttttagatatattatgttctggatcttcctctttgaaaggaataatg |
4433657 |
T |
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| Q |
118 |
tgaatctaaggcatagtttatttgatgcatatcagtccaatggt--caataatatcatgtttttgttgtttcaaaatcgagagaactgtgttgcaacaca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |
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| T |
4433658 |
tgaatctaaggcatagtttatttgatgcatatcagtccaatggttacaataatatcatgttttggttgttgcaaaatcgagagaactgtgttgcaacaca |
4433757 |
T |
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| Q |
216 |
agacaaagttgtgagtcactaaaaaatgttggagtgtaaaccatgatgttactc-nnnnnnnnnctttctcccatgaactcatcattcgtttctctgctc |
314 |
Q |
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|||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |
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| T |
4433758 |
agacaaagttgtgactcactataaaatgttggagtgtaaaccatgatgttactctctattttttttttctcccatgaactcatcattcgtttctctgttc |
4433857 |
T |
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| Q |
315 |
ct |
316 |
Q |
| |
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|| |
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|
| T |
4433858 |
ct |
4433859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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