View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19165_low_17 (Length: 291)
Name: NF19165_low_17
Description: NF19165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19165_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 17 - 279
Target Start/End: Complemental strand, 29291869 - 29291608
Alignment:
| Q |
17 |
ctttgcaagtgacaatattgtgaaagtgaaactattcgattaatgctctattgttattaaccaatcgattactcatttgcagcctagatgataagcattt |
116 |
Q |
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| T |
29291869 |
ctttacaagtgacaatattgtgaaagtgaaactattcgattaatgttctactgttattaaccaatcgattactcatttgcagcctagatgataagcattt |
29291770 |
T |
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| Q |
117 |
ggttgaaaagccgagagttcgggcttgtaatatactttttgcccccaacattaaaatggttggtctgatacatcatgattttgacttgcatagtgtttct |
216 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29291769 |
ggttgaaaagctgagagttcgggcttgtaatatactttttgcccccaacattaaaatggttggtctgatacatcatgattttgacttgcatagtgtttct |
29291670 |
T |
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| Q |
217 |
acctaaaaacaaatatgcgactaaacattttaaatgttcaaatgtttaggtcactaatatatt |
279 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
29291669 |
acctaaaaacaaatatgcgactaaaca-tttaaatgttcaaatgtgtaggtcactaatatatt |
29291608 |
T |
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