View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19165_low_19 (Length: 287)
Name: NF19165_low_19
Description: NF19165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19165_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 19 - 273
Target Start/End: Complemental strand, 38698140 - 38697886
Alignment:
| Q |
19 |
catctaattgagcatagcctccaaaaccagaagaagagttcaaaagtggattgcttcaacttctgtctaaaattgaaggctacagccaaacacgtttttg |
118 |
Q |
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| T |
38698140 |
catctaattgagcatagcctccaaaaccagaagaagagttcaaaagtggattgcttcaacttctgtctaaaattgaaggctgcagccaaacacgtttttg |
38698041 |
T |
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| Q |
119 |
tttacaaagtaatacctactctcatctcttccccttcaccataatatattccccaacctatatatatacactaatgaggcagaggcagatatctccacct |
218 |
Q |
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| T |
38698040 |
tttacaaagtaatacctactctcatctcttccccttcaccataatatattccccaacctatatatatacactaatgaggcagaggcagatatctccacct |
38697941 |
T |
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| Q |
219 |
caaccttaattcatatccaacagcaactatatacttgcataccattctattcctt |
273 |
Q |
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| T |
38697940 |
caaccttaattcatatccaacaacaactatatacttgcataccattctattcctt |
38697886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 47 - 265
Target Start/End: Original strand, 38628221 - 38628428
Alignment:
| Q |
47 |
agaagaagagttcaaaagtggattgcttcaacttctgtctaaaattgaaggctacagccaaacacgtttttgtttacaaagtaatacctactctcatctc |
146 |
Q |
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||||||| |||||||||| |||| |||||| || ||| ||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||| |
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| T |
38628221 |
agaagaattgttcaaaagtagattacttcaagttttgtttaacattgaaggctacagccaaacacgtttttgtttccaaagtaagacctactctcacctc |
38628320 |
T |
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| Q |
147 |
ttccccttcaccataatatattccccaacctatatatatacactaatgaggcagaggcagatatctccacctcaaccttaattcatatccaacagcaact |
246 |
Q |
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| T |
38628321 |
ctccccttc------atatattttccaacctatatatat--actcatgaggca----tatat-tcttcacctcaaccttaattagtatccaacagcatat |
38628407 |
T |
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| Q |
247 |
at--atacttgcataccattc |
265 |
Q |
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|| ||||||||||||||||| |
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| T |
38628408 |
atacatacttgcataccattc |
38628428 |
T |
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