View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19165_low_21 (Length: 250)

Name: NF19165_low_21
Description: NF19165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19165_low_21
NF19165_low_21
[»] chr4 (13 HSPs)
chr4 (1-239)||(5565138-5565376)
chr4 (1-213)||(5885978-5886190)
chr4 (1-212)||(5858429-5858640)
chr4 (2-239)||(5570755-5570992)
chr4 (2-237)||(5582962-5583197)
chr4 (20-239)||(5852656-5852875)
chr4 (1-213)||(5605482-5605694)
chr4 (2-177)||(5847764-5847939)
chr4 (11-171)||(3749358-3749518)
chr4 (23-239)||(5553547-5553763)
chr4 (18-213)||(5894840-5895035)
chr4 (12-239)||(5559347-5559574)
chr4 (11-56)||(5613627-5613672)
[»] chr8 (1 HSPs)
chr8 (6-128)||(1485703-1485825)
[»] scaffold0454 (1 HSPs)
scaffold0454 (6-128)||(884-1007)


Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 5565376 - 5565138
Alignment:
Q  1 ctgtggtctttcaggtccccttgattcttccctttcaaaactagagaacctatcagtcattaatcttggtgacaataatttttcatccccagtgccacaa 100  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  5565376 ctgtggtctttcaggaccccttgattcttccctttcaaaactagagaacctatcagtcattattcttggtgacaataatttttcatccccagtgccacaa 5565277  T
Q  101 acatttgccaattttaaaaacctgaccaccctcagtcttgtagattgtgggttgaccggtacatttccacaaaatatttttcagattgaaacattgtctg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5565276 acatttgccaattttaaaaacctgaccaccctcagtcttgtagattgtgggttgaccggtacatttccacaaaatatttttcagattgaaacattgtctg 5565177  T
Q  201 ttattgacttatcatttaactacaatctccatggttcat 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  5565176 ttattgacttatcatttaactacaatctccatggttcat 5565138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 5885978 - 5886190
Alignment:
Q  1 ctgtggtctttcaggtccccttgattcttccctttcaaaactagagaacctatcagtcattaatcttggtgacaataatttttcatccccagtgccacaa 100  Q
    |||| |||| ||||| ||||||||||| |||||||||||||||||||||||||| ||||||| |||||| || || ||||||||||||||||||||||||    
T  5885978 ctgtagtctatcaggaccccttgattcctccctttcaaaactagagaacctatcggtcattattcttggcgagaacaatttttcatccccagtgccacaa 5886077  T
Q  101 acatttgccaattttaaaaacctgaccaccctcagtcttgtagattgtgggttgaccggtacatttccacaaaatatttttcagattgaaacattgtctg 200  Q
    ||||||||||||||||||||||| |||||||||| ||||  | |||| || ||||| | ||||||||||||||| || || || |||  |||| ||||      
T  5886078 acatttgccaattttaaaaacctaaccaccctcaatcttcaaaattgcggattgacagatacatttccacaaaagatcttccaaattagaacactgtcaa 5886177  T
Q  201 ttattgacttatc 213  Q
    |||||||||||||    
T  5886178 ttattgacttatc 5886190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 5858640 - 5858429
Alignment:
Q  1 ctgtggtctttcaggtccccttgattcttccctttcaaaactagagaacctatcagtcattaatcttggtgacaataatttttcatccccagtgccacaa 100  Q
    ||||||||| | |||||||||||||||||||||  ||||||||||||||||||||||||||| ||||| ||| ||  |||||||||||||||| ||  ||    
T  5858640 ctgtggtctattaggtccccttgattcttccctaacaaaactagagaacctatcagtcattattcttgatgagaactatttttcatccccagttcctgaa 5858541  T
Q  101 acatttgccaattttaaaaacctgaccaccctcagtcttgtagattgtgggttgaccggtacatttccacaaaatatttttcagattgaaacattgtctg 200  Q
    |||||||| |||||||||||| |||| ||||||||||||| |  |||||  ||  |||||||||||||||| || || |||||||||| |||||||||||    
T  5858540 acatttgcaaattttaaaaacttgactaccctcagtcttgcattttgtgcattatccggtacatttccacagaagatctttcagattggaacattgtctg 5858441  T
Q  201 ttattgacttat 212  Q
    | ||||||||||    
T  5858440 tgattgacttat 5858429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 2 - 239
Target Start/End: Original strand, 5570755 - 5570992
Alignment:
Q  2 tgtggtctttcaggtccccttgattcttccctttcaaaactagagaacctatcagtcattaatcttggtgacaataatttttcatccccagtgccacaaa 101  Q
    |||| ||| ||||| ||||||  |||||||||  ||| |||| |||||||||||||||||| ||||| ||  ||  |||| ||||||| ||||||| |||    
T  5570755 tgtgatctatcaggacccctttcttcttccctaacaagactaaagaacctatcagtcattattcttgatgggaactatttctcatccctagtgccagaaa 5570854  T
Q  102 catttgccaattttaaaaacctgaccaccctcagtcttgtagattgtgggttgaccggtacatttccacaaaatatttttcagattgaaacattgtctgt 201  Q
    ||||| ||||||||||||| || |||||||||||||||  |  |||||| ||||| |||||||||||||||||||| ||||| |||| |||||||||  |    
T  5570855 cattttccaattttaaaaaactaaccaccctcagtctttcatcttgtggattgacaggtacatttccacaaaatatctttcaaattggaacattgtcatt 5570954  T
Q  202 tattgacttatcatttaactacaatctccatggttcat 239  Q
    |||||| |||||||| ||||||||||||||||||||||    
T  5570955 tattgatttatcattcaactacaatctccatggttcat 5570992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 2 - 237
Target Start/End: Original strand, 5582962 - 5583197
Alignment:
Q  2 tgtggtctttcaggtccccttgattcttccctttcaaaactagagaacctatcagtcattaatcttggtgacaataatttttcatccccagtgccacaaa 101  Q
    |||| ||| |||||||||||||||||||||||  ||| |||| |||||||||||||||||| ||||| ||  || |||||||||||||||||||||||||    
T  5582962 tgtgatctatcaggtccccttgattcttccctaacaagactaaagaacctatcagtcattattcttgatgggaacaatttttcatccccagtgccacaaa 5583061  T
Q  102 catttgccaattttaaaaacctgaccaccctcagtcttgtagattgtgggttgaccggtacatttccacaaaatatttttcagattgaaacattgtctgt 201  Q
    ||||| ||||||| |||||  | |||||||||||||||| |  |||||| ||||| |||| ||||||| |||  || ||||| |||| ||| || ||  |    
T  5583062 cattttccaatttcaaaaaattaaccaccctcagtcttgcatcttgtggattgactggtaaatttccaaaaaccatctttcaaattggaacgttctcatt 5583161  T
Q  202 tattgacttatcatttaactacaatctccatggttc 237  Q
    |||||||||||| || ||||||||||||||||||||    
T  5583162 tattgacttatccttcaactacaatctccatggttc 5583197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 20 - 239
Target Start/End: Original strand, 5852656 - 5852875
Alignment:
Q  20 cttgattcttccctttcaaaactagagaacctatcagtcattaatcttggtgacaataatttttcatccccagtgccacaaacatttgccaattttaaaa 119  Q
    |||||||||||||| |||||||||  ||||||||||||||||| ||||| |   || |||||||| ||||| || ||| |||||||||| |||||| |||    
T  5852656 cttgattcttccctatcaaaactaaggaacctatcagtcattattcttgataggaacaatttttcttcccccgttccagaaacatttgctaattttcaaa 5852755  T
Q  120 acctgaccaccctcagtcttgtagattgtgggttgaccggtacatttccacaaaatatttttcagattgaaacattgtctgttattgacttatcatttaa 219  Q
    ||||||||||||| ||||||  ||||||||| ||||| |||||||||||||| || || |||||||||| |||| |||||||||||||| || |||  ||    
T  5852756 acctgaccacccttagtctttcagattgtggattgactggtacatttccacagaagatctttcagattggaacactgtctgttattgacataacatacaa 5852855  T
Q  220 ctacaatctccatggttcat 239  Q
    |  |||||||||||||||||    
T  5852856 cagcaatctccatggttcat 5852875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 5605694 - 5605482
Alignment:
Q  1 ctgtggtctttcaggtccccttgattcttccctttcaaaactagagaacctatcagtcattaatcttggtgacaataatttttcatccccagtgccacaa 100  Q
    ||||||| ||||||| |||||||||||||||||  |||   |||||||| |||| ||||||  ||||| ||  || ||||||||||||||||||||| ||    
T  5605694 ctgtggtttttcaggaccccttgattcttccctagcaaggttagagaacttatctgtcattcttcttgatgggaacaatttttcatccccagtgccagaa 5605595  T
Q  101 acatttgccaattttaaaaacctgaccaccctcagtcttgtagattgtgggttgaccggtacatttccacaaaatatttttcagattgaaacattgtctg 200  Q
    ||||||||||||||||||||||| |||||||||| ||||   |||||||| ||||| || ||||||||||||||||| ||||| |||  |||| |||| |    
T  5605594 acatttgccaattttaaaaacctaaccaccctcaatcttaacgattgtggattgactggaacatttccacaaaatatatttcaaattagaacactgtcag 5605495  T
Q  201 ttattgacttatc 213  Q
     ||||||||||||    
T  5605494 atattgacttatc 5605482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 2 - 177
Target Start/End: Original strand, 5847764 - 5847939
Alignment:
Q  2 tgtggtctttcaggtccccttgattcttccctttcaaaactagagaacctatcagtcattaatcttggtgacaataatttttcatccccagtgccacaaa 101  Q
    |||| ||| ||||| |||||||||||||||||  ||| ||||||||||||  | ||||||  ||||||||| || || ||||||||||||||||||||||    
T  5847764 tgtgatctatcaggaccccttgattcttccctaacaagactagagaacctgacggtcattgttcttggtgagaacaacttttcatccccagtgccacaaa 5847863  T
Q  102 catttgccaattttaaaaacctgaccaccctcagtcttgtagattgtgggttgaccggtacatttccacaaaatat 177  Q
    |||||||||||||||||||||| |||||||||| ||||  | | ||||| |||| |||||||||||||||||||||    
T  5847864 catttgccaattttaaaaacctaaccaccctcaatcttcgaaagtgtggattgatcggtacatttccacaaaatat 5847939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 11 - 171
Target Start/End: Complemental strand, 3749518 - 3749358
Alignment:
Q  11 tcaggtccccttgattcttccctttcaaaactagagaacctatcagtcattaatcttggtgacaataatttttcatccccagtgccacaaacatttgcca 110  Q
    ||||| |||||||||||||||||  ||| ||||||||||||||||||||||| ||||| ||  || ||||||||||| ||||||||  ||||||||||||    
T  3749518 tcaggaccccttgattcttccctaacaagactagagaacctatcagtcattattcttgatgggaacaatttttcatcaccagtgccgaaaacatttgcca 3749419  T
Q  111 attttaaaaacctgaccaccctcagtcttgtagattgtgggttgaccggtacatttccaca 171  Q
    ||||||||||| ||||||||||||||||||    |||||  ||||||||||||||||||||    
T  3749418 attttaaaaacttgaccaccctcagtcttgcgctttgtgaattgaccggtacatttccaca 3749358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 23 - 239
Target Start/End: Complemental strand, 5553763 - 5553547
Alignment:
Q  23 gattcttccctttcaaaactagagaacctatcagtcattaatcttggtgacaataatttttcatccccagtgccacaaacatttgccaattttaaaaacc 122  Q
    ||||||||||| ||||||||| | |||||||| ||||||| ||||| |   || |||||||| ||||| || ||| ||||||||||||||||| ||||||    
T  5553763 gattcttccctatcaaaactaaaaaacctatcggtcattattcttgataggaacaatttttcttcccccgttccagaaacatttgccaattttcaaaacc 5553664  T
Q  123 tgaccaccctcagtcttgtagattgtgggttgaccggtacatttccacaaaatatttttcagattgaaacattgtctgttattgacttatcatttaacta 222  Q
    |||||||||| ||||||  |  |||||| || || ||||||||||||||||| || ||||| ||||||| | | || |||||||||||| ||   ||| |    
T  5553663 tgaccacccttagtcttacatcttgtggattaacaggtacatttccacaaaagatctttcaaattgaaaaactctccgttattgacttagcacacaacaa 5553564  T
Q  223 caatctccatggttcat 239  Q
    |||||||||||||||||    
T  5553563 caatctccatggttcat 5553547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 18 - 213
Target Start/End: Original strand, 5894840 - 5895035
Alignment:
Q  18 cccttgattcttccctttcaaaactagagaacctatcagtcattaatcttggtgacaataatttttcatccccagtgccacaaacatttgccaattttaa 117  Q
    |||||||||||||||| |||| |||| ||||||| |||||||||| ||||  |   || |||||||||||| || ||||| |||||||||||||||||||    
T  5894840 cccttgattcttccctatcaagactacagaacctgtcagtcattattctttatcgaaacaatttttcatcctcattgccagaaacatttgccaattttaa 5894939  T
Q  118 aaacctgaccaccctcagtcttgtagattgtgggttgaccggtacatttccacaaaatatttttcagattgaaacattgtctgttattgacttatc 213  Q
    |||||| |||||||||| ||||  | | ||||| |||| |||||||||||||||||| || || || |||   ||| |||| ||||||||||||||    
T  5894940 aaacctaaccaccctcaatcttcgaaagtgtggattgatcggtacatttccacaaaagatcttccaaattaggacactgtcagttattgacttatc 5895035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 239
Target Start/End: Complemental strand, 5559574 - 5559347
Alignment:
Q  12 caggtccccttgattcttccctttcaaaactagagaacctatcagtcattaatcttggtgacaataatttttcatccccagtgccacaaacatttgccaa 111  Q
    |||| ||||||||||| || || |||| |||| ||||  ||||  |||||| ||||| ||  || |||||||| ||||| |||||  |||||||| ||||    
T  5559574 caggaccccttgattcatctctgtcaagactaaagaatttatcgatcattattcttgatggaaacaatttttcttccccggtgcctgaaacattttccaa 5559475  T
Q  112 ttttaaaaacctgaccaccctcagtcttgtagattgtgggttgaccggtacatttccacaaaatatttttcagattgaaacattgtctgttattgactta 211  Q
    ||| | |||  |||| ||||| ||||||| || |||| | ||||| | |||||||||||| || || || || |||| |||||||||  |||||||||||    
T  5559474 tttcagaaatttgacaacccttagtcttgcagcttgtagattgactgatacatttccacataagatcttccaaattggaacattgtcatttattgactta 5559375  T
Q  212 tcatttaactacaatctccatggttcat 239  Q
     |||| ||| | ||||||||| ||||||    
T  5559374 acattaaacaaaaatctccatagttcat 5559347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 5613672 - 5613627
Alignment:
Q  11 tcaggtccccttgattcttccctttcaaaactagagaacctatcag 56  Q
    ||||| || |||||||||||||||||||||||||||||||||||||    
T  5613672 tcaggacctcttgattcttccctttcaaaactagagaacctatcag 5613627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 6 - 128
Target Start/End: Complemental strand, 1485825 - 1485703
Alignment:
Q  6 gtctttcaggtccccttgattcttccctttcaaaactagagaacctatcagtcattaatcttggtgacaataatttttcatccccagtgccacaaacatt 105  Q
    |||| ||||| ||| ||||||| |||||||||||||||||||||||| |  |||||| ||||| | | || ||| ||||||| ||| | ||| |||||||    
T  1485825 gtctatcaggacccgttgattcctccctttcaaaactagagaacctaaccatcattattcttgataagaacaatctttcatcgccaattccagaaacatt 1485726  T
Q  106 tgccaattttaaaaacctgacca 128  Q
    | |||||||||||||||||||||    
T  1485725 taccaattttaaaaacctgacca 1485703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0454 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0454
Description:

Target: scaffold0454; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 128
Target Start/End: Complemental strand, 1007 - 884
Alignment:
Q  6 gtctttcaggtccccttgattcttccctttcaaaactagagaacctatcagtcattaatcttggtgacaataatttttcatccccagtgccacaaacatt 105  Q
    |||| ||||| ||| ||||||| |||||||||||||||||||||||| |  |||||| ||||| | | || ||| ||||||| ||| | ||| |||||||    
T  1007 gtctatcaggacccgttgattcctccctttcaaaactagagaacctaaccatcattattcttgataagaacaatctttcatcgccaattccagaaacatt 908  T
Q  106 tgcc-aattttaaaaacctgacca 128  Q
    | || |||||||||||||||||||    
T  907 tacctaattttaaaaacctgacca 884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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