View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19165_low_23 (Length: 247)
Name: NF19165_low_23
Description: NF19165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19165_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 227
Target Start/End: Original strand, 16097928 - 16098137
Alignment:
| Q |
18 |
tgaccatgaaagaggaagtaaggatgtagattccatcattgagaagagtggccatgaatggggaatcaaggaggaagatatttccgagacaaagaagatg |
117 |
Q |
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| T |
16097928 |
tgaccatgaaagaggaagtaaggatgtagattccatcattgagaagagtgatcatgaatggggaatcaaggaggaagatatttcggagacaaagaagatg |
16098027 |
T |
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| Q |
118 |
aatttggaaaaagaagaaatcattacttcctcgcagaacaagaatgaccctaaccaagtgagttcctttatatttttaaatatttctcaataaaaatact |
217 |
Q |
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| T |
16098028 |
aatttggaaaaagaagaaatcattacttcctcgcagaataagaatgaccctaaccaagtgagttcctttatatttttaaatatttctcaataaagatact |
16098127 |
T |
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| Q |
218 |
cagttttatt |
227 |
Q |
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| T |
16098128 |
cagttttatt |
16098137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 136
Target Start/End: Original strand, 16076635 - 16076727
Alignment:
| Q |
44 |
tagattccatcattgagaagagtggccatgaatggggaatcaaggaggaagatatttccgagacaaagaagatgaatttggaaaaagaagaaa |
136 |
Q |
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| T |
16076635 |
tagaatccattattgagaagagtggccatgaattgcgaagtaaggaagaagagattgcactgataaagaagatggttttggaaaaagaagaaa |
16076727 |
T |
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