View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19165_low_27 (Length: 210)

Name: NF19165_low_27
Description: NF19165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19165_low_27
NF19165_low_27
[»] chr1 (1 HSPs)
chr1 (1-202)||(5130464-5130674)
[»] chr5 (6 HSPs)
chr5 (1-38)||(8677636-8677673)
chr5 (2-38)||(1600519-1600555)
chr5 (81-115)||(36551390-36551424)
chr5 (1-38)||(8548329-8548366)
chr5 (1-38)||(9074958-9074995)
chr5 (2-38)||(8535332-8535368)
[»] chr7 (1 HSPs)
chr7 (81-115)||(46355860-46355894)
[»] chr3 (2 HSPs)
chr3 (81-115)||(26990456-26990490)
chr3 (81-115)||(53519824-53519858)
[»] chr2 (4 HSPs)
chr2 (81-115)||(2610832-2610866)
chr2 (81-115)||(17429294-17429328)
chr2 (81-115)||(39709205-39709239)
chr2 (81-118)||(33504468-33504505)
[»] scaffold0627 (1 HSPs)
scaffold0627 (1-38)||(4491-4528)
[»] chr4 (1 HSPs)
chr4 (83-115)||(49370040-49370072)


Alignment Details
Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 5130674 - 5130464
Alignment:
Q  1 agacaatattgaggtgctgaatatacactcaaggtaagtggcttctaaaattttatttacccaaatgaatctgatgctccccgaccccacttagtgagat 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  5130674 agacaatattgaggtgctgaatattcactcaaggtaagtggcttctaaaattttatttacccaaatgaatctgatgctccccgaccccacttaatgagat 5130575  T
Q  101 atggcttggtt---------gttgaatctgaggctcccttaaaaatcaatcgtaattagtttgattcataagacatgtgtgagtttcctacattaccgta 191  Q
    |||||||||||         ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  5130574 atggcttggttgttgttgttgttgaatctgaggcttccttaaaaatcaatcgtaattagtttgattcataagacatgtgtgagtttcctacattactgta 5130475  T
Q  192 ctgcctatgct 202  Q
    | |||| ||||    
T  5130474 ccgcctgtgct 5130464  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 8677673 - 8677636
Alignment:
Q  1 agacaatattgaggtgctgaatatacactcaaggtaag 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  8677673 agacaatattgaggtgctgaatatccactcaaggtaag 8677636  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 1600519 - 1600555
Alignment:
Q  2 gacaatattgaggtgctgaatatacactcaaggtaag 38  Q
    ||||||||||||||||||||||| |||||||||||||    
T  1600519 gacaatattgaggtgctgaatatccactcaaggtaag 1600555  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 115
Target Start/End: Original strand, 36551390 - 36551424
Alignment:
Q  81 ccgaccccacttagtgagatatggcttggttgttg 115  Q
    ||||||||||||||||||||| |||||||||||||    
T  36551390 ccgaccccacttagtgagataaggcttggttgttg 36551424  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 8548329 - 8548366
Alignment:
Q  1 agacaatattgaggtgctgaatatacactcaaggtaag 38  Q
    |||||||||||||||||||||||| ||||||| |||||    
T  8548329 agacaatattgaggtgctgaatatccactcaaagtaag 8548366  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 9074958 - 9074995
Alignment:
Q  1 agacaatattgaggtgctgaatatacactcaaggtaag 38  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  9074958 agacaatatcgaggtgctgaatatccactcaaggtaag 9074995  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 8535368 - 8535332
Alignment:
Q  2 gacaatattgaggtgctgaatatacactcaaggtaag 38  Q
    |||||||||||||| |||||||| |||||||||||||    
T  8535368 gacaatattgaggttctgaatatccactcaaggtaag 8535332  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 115
Target Start/End: Complemental strand, 46355894 - 46355860
Alignment:
Q  81 ccgaccccacttagtgagatatggcttggttgttg 115  Q
    ||||||||||||||||||||| |||||||||||||    
T  46355894 ccgaccccacttagtgagataaggcttggttgttg 46355860  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 115
Target Start/End: Original strand, 26990456 - 26990490
Alignment:
Q  81 ccgaccccacttagtgagatatggcttggttgttg 115  Q
    ||||||||||||||||||||| |||||||||||||    
T  26990456 ccgaccccacttagtgagataaggcttggttgttg 26990490  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 115
Target Start/End: Original strand, 53519824 - 53519858
Alignment:
Q  81 ccgaccccacttagtgagatatggcttggttgttg 115  Q
    ||||||||||||||||||||| |||||||||||||    
T  53519824 ccgaccccacttagtgagataaggcttggttgttg 53519858  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 115
Target Start/End: Original strand, 2610832 - 2610866
Alignment:
Q  81 ccgaccccacttagtgagatatggcttggttgttg 115  Q
    ||||||||||||||||||||| |||||||||||||    
T  2610832 ccgaccccacttagtgagataaggcttggttgttg 2610866  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 115
Target Start/End: Original strand, 17429294 - 17429328
Alignment:
Q  81 ccgaccccacttagtgagatatggcttggttgttg 115  Q
    ||||||||||||||||||||| |||||||||||||    
T  17429294 ccgaccccacttagtgagataaggcttggttgttg 17429328  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 115
Target Start/End: Complemental strand, 39709239 - 39709205
Alignment:
Q  81 ccgaccccacttagtgagatatggcttggttgttg 115  Q
    |||||||||||||||| ||||||||||||||||||    
T  39709239 ccgaccccacttagtgggatatggcttggttgttg 39709205  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 81 - 118
Target Start/End: Original strand, 33504468 - 33504505
Alignment:
Q  81 ccgaccccacttagtgagatatggcttggttgttgaat 118  Q
    |||||||||||||||| |||| ||||||||||||||||    
T  33504468 ccgaccccacttagtgggataaggcttggttgttgaat 33504505  T

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Target: scaffold0627 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 4528 - 4491
Alignment:
Q  1 agacaatattgaggtgctgaatatacactcaaggtaag 38  Q
    |||||||||||||||| ||||||| |||||||||||||    
T  4528 agacaatattgaggtgttgaatatccactcaaggtaag 4491  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 115
Target Start/End: Original strand, 49370040 - 49370072
Alignment:
Q  83 gaccccacttagtgagatatggcttggttgttg 115  Q
    |||||||||||||| ||||||||||||||||||    
T  49370040 gaccccacttagtgggatatggcttggttgttg 49370072  T

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