View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19165_low_28 (Length: 207)
Name: NF19165_low_28
Description: NF19165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19165_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 6 - 190
Target Start/End: Complemental strand, 38828086 - 38827902
Alignment:
| Q |
6 |
gatgtcgaagaatatcaagctgatgccaaacaaaaggccattgatgattggcttcctgtaactgcttctagaaatgccaaatggtggtattcagcgttcc |
105 |
Q |
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| T |
38828086 |
gatgtagaaaaaaatcaagctgatgccaaacaaaaggccattgatgattggcttcctgtaactgcttctagaaatgccaaatggtggtattcggcgttcc |
38827987 |
T |
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| Q |
106 |
acaatctaacagccatggttggtgctggtgttctcagtcttccatatgcaatgtcccatatgggatggtatgaatacattctagt |
190 |
Q |
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| T |
38827986 |
acaatctaacagccatggttggtgctggtgttctcagtcttccatatgcaatgtcccatatgggatggtatgaatacattctagt |
38827902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 150
Target Start/End: Original strand, 43851744 - 43851860
Alignment:
| Q |
34 |
aacaaaaggccattgatgattggcttcctgtaactgcttctagaaatgccaaatggtggtattcagcgttccacaatctaacagccatggttggtgctgg |
133 |
Q |
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| T |
43851744 |
aacaaaaggcaatagatgattggcttcccataacttcttcaaggaatgcaaaatggtggtacgcagcttttcacaatgttactgccatggttggagctgg |
43851843 |
T |
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| Q |
134 |
tgttctcagtcttccat |
150 |
Q |
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| T |
43851844 |
tgtcttgagtcttccat |
43851860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 139
Target Start/End: Complemental strand, 41383078 - 41383014
Alignment:
| Q |
75 |
agaaatgccaaatggtggtattcagcgttccacaatctaacagccatggttggtgctggtgttct |
139 |
Q |
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| T |
41383078 |
agaaatgcaaaatggtggtactctactttccacaatgtcactgccatggttggagctggtgttct |
41383014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 75 - 154
Target Start/End: Complemental strand, 14199218 - 14199139
Alignment:
| Q |
75 |
agaaatgccaaatggtggtattcagcgttccacaatctaacagccatggttggtgctggtgttctcagtcttccatatgc |
154 |
Q |
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| T |
14199218 |
agaaatgcaaaatggtggtattctgcattccacaatgttactgccatggttggagctggtgttcttagtctcccttatgc |
14199139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 39 - 175
Target Start/End: Original strand, 34408878 - 34409014
Alignment:
| Q |
39 |
aaggccattgatgattggcttcctgtaactgcttctagaaatgccaaatggtggtattcagcgttccacaatctaacagccatggttggtgctggtgttc |
138 |
Q |
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| T |
34408878 |
aaggccatcgatgattggcttcccgtcactgcctcgaggaaagccaaatggtggtactctgcttttcacaatatcacggccatggttggcgccggcgttc |
34408977 |
T |
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| Q |
139 |
tcagtcttccatatgcaatgtcccatatgggatggta |
175 |
Q |
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| T |
34408978 |
tcacccttccttacgccatgtctaagatgggatggta |
34409014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 78 - 139
Target Start/End: Complemental strand, 7980094 - 7980033
Alignment:
| Q |
78 |
aatgccaaatggtggtattcagcgttccacaatctaacagccatggttggtgctggtgttct |
139 |
Q |
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| T |
7980094 |
aatgcaaaatggtggtactcagcttttcacaatgtcactgccatggttggagctggtgttct |
7980033 |
T |
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