View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19165_low_3 (Length: 557)
Name: NF19165_low_3
Description: NF19165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19165_low_3 |
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| [»] scaffold0144 (2 HSPs) |
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| [»] scaffold0133 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 154; Significance: 2e-81; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 285 - 450
Target Start/End: Complemental strand, 16654761 - 16654596
Alignment:
| Q |
285 |
tctcgaaacttagtgaaaccatgtctgttttctatgtaatatttcaattatgcagcagtgtaaatgtttgtattcaatgtctgtttgagaccaatttctt |
384 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
16654761 |
tctcgaaacttagtgaaaccatgtctgttttctatgtaatatttcaattatgcagcagtgtaaatgtttgtattcattgtccgtttgagaccaatttctt |
16654662 |
T |
|
| Q |
385 |
tagagtttcatcaataaaatcattgttattcagtgaatttatcaatttgtagtagcaaagatattt |
450 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
16654661 |
tagagtttcatcaataaaatcattgttattcagtgaacttatcaatttgtagtagcaaagatattt |
16654596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 306 - 539
Target Start/End: Original strand, 16871528 - 16871763
Alignment:
| Q |
306 |
tgtctgttttctatgtaatatttcaattatgcag-----cagtgtaaatgtttgtattcaatgtctgtttgagaccaatttctttagagtttcatcaata |
400 |
Q |
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|||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
16871528 |
tgtctgttttctttgtaatatttcaattatgcagcgcagcagtgtaaatgcttgtattcaatgtctgtttgagaccattttctttagagtttcatcaata |
16871627 |
T |
|
| Q |
401 |
aaatcattgttattcagtgaatttatcaatttgtagtagcaaagatatttaagcccacgagcatgctagcaggtttgtaaatgattcttctgcactaatc |
500 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||| ||||| || ||| | | | ||||||||||| || | ||||||||||| | |
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| T |
16871628 |
aaatcgttgttattcagtgaatttatcaatttgtagtagcaaaggtattttccccaacgcgtacacctgcaggtttgtacataa---ttctgcactaacc |
16871724 |
T |
|
| Q |
501 |
atctcaacttatgtactatgaattatactaatattgatt |
539 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||| |
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| T |
16871725 |
atctcaacttatgtactatgtattatactaatattgatt |
16871763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 142 - 282
Target Start/End: Complemental strand, 16655048 - 16654908
Alignment:
| Q |
142 |
gaagttagtgatttctacctaaatccaattgttttgatgtagcagaagaaacggtagactcatagacatctttctcaagcttcatcatcaggatgttctt |
241 |
Q |
| |
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|||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||| |
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| T |
16655048 |
gaagttagtgatttgtacctaaatccaattattttgatgtagcagaagaaattgtagactcatggacatctttctcaagcttcatcatctggatgttctt |
16654949 |
T |
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| Q |
242 |
cacaacaacttactcactcgttggaaggaataagtaatcga |
282 |
Q |
| |
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||||||| ||||||||||| ||||||||||| | ||||||| |
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| T |
16654948 |
cacaacatcttactcactcattggaaggaatgaataatcga |
16654908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 33 - 250
Target Start/End: Original strand, 16871167 - 16871374
Alignment:
| Q |
33 |
atgatagacatagtttcatttccttttactgtattttatagcaagagacattgcattccttaatttgtgactacatataggaagctagtaaaagttcttt |
132 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||| ||| || | ||| |||| |||||||| | |
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| T |
16871167 |
atgatcgacatagtttcatttccttttactgtattttatagtaagagacaatgcatttattaatgtgt--------attg-aag-tagttaaagttctat |
16871256 |
T |
|
| Q |
133 |
aattagtatgaagttagtgatttctacctaaatccaattgttttgatgtagcagaagaaacggtagactcatagacatctttctcaagcttcatcatcag |
232 |
Q |
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||||| || |||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||| |||||||| | |
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| T |
16871257 |
aattaataggaagttagtgatttgtacctaaatccaattattttgatgtagcagaagaaattgtagactcatggacatctttctcaagcatcatcatctg |
16871356 |
T |
|
| Q |
233 |
gatgttcttcacaacaac |
250 |
Q |
| |
|
||||||||||| |||||| |
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| T |
16871357 |
gatgttcttcaaaacaac |
16871374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 287 - 432
Target Start/End: Complemental strand, 16734615 - 16734470
Alignment:
| Q |
287 |
tcgaaacttagtgaaaccatgtctgttttctatgtaatatttcaattatgcagcagtgtaaatgtttgtattcaa-tgtctgtttgagaccaatttcttt |
385 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||||||| |||| | ||||||||||||||||||||||||| | ||||||||| || | ||| ||| |
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|
| T |
16734615 |
tcgaaacttagtgaaactgtgtctgttttctatgaaatattttaattctacagcagtgtaaatgtttgtattcaattttctgtttgatacaacttttttt |
16734516 |
T |
|
| Q |
386 |
agagtttcatcaataaaatcattgttattcagtgaatttatcaattt |
432 |
Q |
| |
|
|||||||||||||||||| |||||||| | | ||||||||||||| |
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| T |
16734515 |
tgagtttcatcaataaaattgttgttatt-aatcaatttatcaattt |
16734470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 366 - 450
Target Start/End: Original strand, 16770149 - 16770233
Alignment:
| Q |
366 |
tgtttgagaccaatttctttagagtttcatcaataaaatcattgttattcagtgaatttatcaatttgtagtagcaaagatattt |
450 |
Q |
| |
|
||||||| || | |||| || ||||||||||||||||||| ||||||||| |||||||||||||||| || |||||||||||||| |
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| T |
16770149 |
tgtttgatacaactttcgtttgagtttcatcaataaaatcgttgttattcggtgaatttatcaatttctactagcaaagatattt |
16770233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 289 - 354
Target Start/End: Original strand, 16770089 - 16770154
Alignment:
| Q |
289 |
gaaacttagtgaaaccatgtctgttttctatgtaatatttcaattatgcagcagtgtaaatgtttg |
354 |
Q |
| |
|
||||||| ||||||| ||||||||||||||| ||||||| |||| |||||||||||||||||||| |
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| T |
16770089 |
gaaactttgtgaaactgtgtctgttttctatgaaatattttaattctgcagcagtgtaaatgtttg |
16770154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 306 - 354
Target Start/End: Complemental strand, 16772327 - 16772279
Alignment:
| Q |
306 |
tgtctgttttctatgtaatatttcaattatgcagcagtgtaaatgtttg |
354 |
Q |
| |
|
||||||||||||||| ||||||| |||| |||||||||||||||||||| |
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| T |
16772327 |
tgtctgttttctatgaaatattttaattctgcagcagtgtaaatgtttg |
16772279 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144 (Bit Score: 102; Significance: 2e-50; HSPs: 2)
Name: scaffold0144
Description:
Target: scaffold0144; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 285 - 450
Target Start/End: Original strand, 4758 - 4923
Alignment:
| Q |
285 |
tctcgaaacttagtgaaaccatgtctgttttctatgtaatatttcaattatgcagcagtgtaaatgtttgtattcaatgtctgtttgagaccaatttctt |
384 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||||| |||| |||||||||||||||||||||||||||| ||||||||| | | |||||| |
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|
| T |
4758 |
tctcgaaacttagtgaaactgcgtctgttttctatgaaatattttaattctgcagcagtgtaaatgtttgtattcaatctctgtttgattcaactttctt |
4857 |
T |
|
| Q |
385 |
tagagtttcatcaataaaatcattgttattcagtgaatttatcaatttgtagtagcaaagatattt |
450 |
Q |
| |
|
| ||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
4858 |
ttgagtttcatcaataaaatcgttattattcagtgaatttatcaatttgtaccagcaaagatattt |
4923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 306 - 450
Target Start/End: Complemental strand, 6906 - 6762
Alignment:
| Q |
306 |
tgtctgttttctatgtaatatttcaattatgcagcagtgtaaatgtttgtattcaa-tgtctgtttgagaccaatttctttagagtttcatcaataaaat |
404 |
Q |
| |
|
||||||||||||||| ||||||| |||| | ||||||||||||||||||||||||| | ||||||||| || | ||||||| ||||||||| ||||||| |
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|
| T |
6906 |
tgtctgttttctatgaaatattttaattctacagcagtgtaaatgtttgtattcaattttctgtttgatacaactttctttggagtttcattgataaaat |
6807 |
T |
|
| Q |
405 |
cattgttattcagtgaatttatcaatttgtagtagcaaagatattt |
450 |
Q |
| |
|
|||||||| | | ||||||||||||| | || ||||||||||| |
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|
| T |
6806 |
tgttgttatt-aatcaatttatcaatttccactaccaaagatattt |
6762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: scaffold0133
Description:
Target: scaffold0133; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 285 - 450
Target Start/End: Complemental strand, 15361 - 15196
Alignment:
| Q |
285 |
tctcgaaacttagtgaaaccatgtctgttttctatgtaatatttcaattatgcagcagtgtaaatgtttgtattcaa-tgtctgtttgagaccaatttct |
383 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||||||| |||| | ||||||||||||||||||||||||| | ||||||||| || | ||||| |
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|
| T |
15361 |
tctcgaaacttagtgaaactgtgtctgttttctatgaaatattttaattctacagcagtgtaaatgtttgtattcaattttctgtttgatacaactttct |
15262 |
T |
|
| Q |
384 |
ttagagtttcatcaataaaatcattgttattcagtgaatttatcaatttgtagtagcaaagatattt |
450 |
Q |
| |
|
|| ||||||| | ||||||| |||||||| | ||||||||||||||| | || ||||||||||| |
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|
| T |
15261 |
tttgagtttccttgataaaattgttgttatt-aatgaatttatcaatttccactaccaaagatattt |
15196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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